5T3GA

Thaumatin soaked with selenourea for 10 min
Total Genus 52
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
52
sequence length
206
structure length
206
Chain Sequence
ATFEIVNRCSYTVWAAASKGDAALDAGGRQLNSGESWTINVEPGTNGGKIWARTDCYFDDSGSGICKTGDCGGLLRCKRFGRPPTTLAEFSLNQYGKDYIDISNIKGFNVPMNFSPTTRGCRGVRCAADIVGQCPAKLKAPGGGCNDACTVFQTSEYCCTTGKCGPTEYSRFFKRLCPDAFSYVLDKPTTVTCPGSSNYRVTFCPT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Selenourea: a convenient phasing vehicle for macromolecular X-ray crystal structures.
pubmed doi rcsb
molecule tags Plant protein
molecule keywords Thaumatin-1
total genus 52
structure length 206
sequence length 206
ec nomenclature
pdb deposition date 2016-08-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00314 Thaumatin Thaumatin family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.110.10 Mainly Beta Sandwich Thaumatin Thaumatin 5t3gA00
5FGTA 4EL2A 2VHKA 4L2JA 2PE7A 4BCTA 3DZPA 3G7MA 1THVA 1LY0A 4DJ1A 2WBZA 2VU7A 3VHGA 4AXRA 3X3SA 4C3CA 5KW5A 4AXUA 2VU6A 4EKHA 3N02A 5KW4A 1PCVA 1DU5A 3V8AA 2VHRA 4EKTA 2BLUA 2VI3A 3AOKA 2AHNA 2D8PA 2VI2A 2VI1A 5AVGA 5LH0A 4MBTA 1THWA 4DJ0A 4DIZA 4XVBA 4ELAA 1THUA 3E3SA 3N03A 3V82A 3X3RA 4ZG3A 3V84A 3VCHA 1LR2A 1LR3A 5LN0A 3VCJA 3VCIA 2BLRA 5LH6A 5FGXA 5KW0A 4TVTA 5KW8A 3V88A 5KW3A 4DC6A 4BALA 3E0AA 3GD9A 5KVZA 5LH3A 5LMHA 2VI4A 1Z3QA 5LH1A 3X3QA 3DZRA 5AMZA 3WXSA 3V87A 2OQNA 5KVWA 4EKAA 3X3PA 3VJQA 5KW7A 1LXZA 4EKOA 3DZNA 1AUNA 5JVXA 3AL7A 5LH7A 1PP3A 5KVXA 3V7VA 2D8OA 2A7IX 4DIYA 3ZEJA 5T3GA 2G4YA 4BARA 4EK0A 4ZXRA 3VCGA 4JRUA 3VHFA 5L4RA 4EKBA 4L5HA 3WOUA 3ZS3A 5A47A 3VCKA 3GD0A 5K7QA 5LH5A 3ALDA 3X3OA 2I0WA 3VCEA 4EL3A 1RQWA 3X3TA 4EL7A 4DC5A 3QY5A
chains in the Genus database with same CATH superfamily
5FGTA 4EL2A 2VHKA 4L2JA 2PE7A 4BCTA 3DZPA 3G7MA 1THVA 1LY0A 4DJ1A 2WBZA 2VU7A 3VHGA 4AXRA 3X3SA 4C3CA 5KW5A 4AXUA 2VU6A 4EKHA 3N02A 5KW4A 1PCVA 1DU5A 3V8AA 2VHRA 4EKTA 2BLUA 2VI3A 3AOKA 2AHNA 2D8PA 2VI2A 2VI1A 5AVGA 5LH0A 4MBTA 1THWA 4DJ0A 4DIZA 4XVBA 4ELAA 1THUA 3E3SA 3N03A 3V82A 3X3RA 4ZG3A 3V84A 3VCHA 1LR2A 1LR3A 5LN0A 3VCJA 3VCIA 2BLRA 5LH6A 5FGXA 5KW0A 4TVTA 5KW8A 3V88A 5KW3A 4DC6A 4BALA 3E0AA 3GD9A 5KVZA 5LH3A 5LMHA 2VI4A 1Z3QA 5LH1A 3X3QA 3DZRA 5AMZA 3WXSA 3V87A 2OQNA 5KVWA 4EKAA 3X3PA 3VJQA 5KW7A 1LXZA 4EKOA 3DZNA 1AUNA 5JVXA 3AL7A 5LH7A 1PP3A 5KVXA 3V7VA 2D8OA 2A7IX 4DIYA 3ZEJA 5T3GA 2G4YA 4BARA 4EK0A 4ZXRA 3VCGA 4JRUA 3VHFA 5L4RA 4EKBA 4L5HA 3WOUA 3ZS3A 5A47A 3VCKA 3GD0A 5K7QA 5LH5A 3ALDA 3X3OA 2I0WA 3VCEA 4EL3A 1RQWA 3X3TA 4EL7A 4DC5A 3QY5A
chains in the Genus database with same CATH topology
5FGTA 4EL2A 2VHKA 4L2JA 2PE7A 4BCTA 3DZPA 3G7MA 1THVA 1LY0A 4DJ1A 2WBZA 2VU7A 3VHGA 4AXRA 3X3SA 4C3CA 5KW5A 4AXUA 2VU6A 4EKHA 3N02A 5KW4A 1PCVA 1DU5A 3V8AA 2VHRA 4EKTA 2BLUA 2VI3A 3AOKA 2AHNA 2D8PA 2VI2A 2VI1A 5AVGA 5LH0A 4MBTA 1THWA 4DJ0A 4DIZA 4XVBA 4ELAA 1THUA 3E3SA 3N03A 3V82A 3X3RA 4ZG3A 3V84A 3VCHA 1LR2A 1LR3A 5LN0A 3VCJA 3VCIA 2BLRA 5LH6A 5FGXA 5KW0A 4TVTA 5KW8A 3V88A 5KW3A 4DC6A 4BALA 3E0AA 3GD9A 5KVZA 5LH3A 5LMHA 2VI4A 1Z3QA 5LH1A 3X3QA 3DZRA 5AMZA 3WXSA 3V87A 2OQNA 5KVWA 4EKAA 3X3PA 3VJQA 5KW7A 1LXZA 4EKOA 3DZNA 1AUNA 5JVXA 3AL7A 5LH7A 1PP3A 5KVXA 3V7VA 2D8OA 2A7IX 4DIYA 3ZEJA 5T3GA 2G4YA 4BARA 4EK0A 4ZXRA 3VCGA 4JRUA 3VHFA 5L4RA 4EKBA 4L5HA 3WOUA 3ZS3A 5A47A 3VCKA 3GD0A 5K7QA 5LH5A 3ALDA 3X3OA 2I0WA 3VCEA 4EL3A 1RQWA 3X3TA 4EL7A 4DC5A 3QY5A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5FGT A;  4EL2 A;  2VHK A;  4L2J A;  2PE7 A;  4BCT A;  3DZP A;  3G7M A;  1THV A;  1LY0 A;  4DJ1 A;  2WBZ A;  2VU7 A;  3VHG A;  4AXR A;  3X3S A;  4C3C A;  5KW5 A;  4AXU A;  2VU6 A;  4EKH A;  3N02 A;  5KW4 A;  1PCV A;  1DU5 A;  3V8A A;  2VHR A;  4EKT A;  2BLU A;  2VI3 A;  3AOK A;  2AHN A;  2D8P A;  2VI2 A;  2VI1 A;  5AVG A;  5LH0 A;  4MBT A;  1THW A;  4DJ0 A;  4DIZ A;  4XVB A;  4ELA A;  1THU A;  3E3S A;  3N03 A;  3V82 A;  3X3R A;  4ZG3 A;  3V84 A;  3VCH A;  1LR2 A;  1LR3 A;  5LN0 A;  3VCJ A;  3VCI A;  2BLR A;  5LH6 A;  5FGX A;  5KW0 A;  4TVT A;  5KW8 A;  3V88 A;  5KW3 A;  4DC6 A;  4BAL A;  3E0A A;  3GD9 A;  5KVZ A;  5LH3 A;  5LMH A;  2VI4 A;  1Z3Q A;  5LH1 A;  3X3Q A;  3DZR A;  5AMZ A;  3WXS A;  3V87 A;  2OQN A;  5KVW A;  4EKA A;  3X3P A;  3VJQ A;  5KW7 A;  1LXZ A;  4EKO A;  3DZN A;  1AUN A;  5JVX A;  3AL7 A;  5LH7 A;  1PP3 A;  5KVX A;  3V7V A;  2D8O A;  2A7I X;  4DIY A;  3ZEJ A;  5T3G A;  2G4Y A;  4BAR A;  4EK0 A;  4ZXR A;  3VCG A;  4JRU A;  3VHF A;  5L4R A;  4EKB A;  4L5H A;  3WOU A;  3ZS3 A;  5A47 A;  3VCK A;  3GD0 A;  5K7Q A;  5LH5 A;  3ALD A;  3X3O A;  2I0W A;  3VCE A;  4EL3 A;  1RQW A;  3X3T A;  4EL7 A;  4DC5 A;  3QY5 A; 
#chains in the Genus database with same CATH topology
 5FGT A;  4EL2 A;  2VHK A;  4L2J A;  2PE7 A;  4BCT A;  3DZP A;  3G7M A;  1THV A;  1LY0 A;  4DJ1 A;  2WBZ A;  2VU7 A;  3VHG A;  4AXR A;  3X3S A;  4C3C A;  5KW5 A;  4AXU A;  2VU6 A;  4EKH A;  3N02 A;  5KW4 A;  1PCV A;  1DU5 A;  3V8A A;  2VHR A;  4EKT A;  2BLU A;  2VI3 A;  3AOK A;  2AHN A;  2D8P A;  2VI2 A;  2VI1 A;  5AVG A;  5LH0 A;  4MBT A;  1THW A;  4DJ0 A;  4DIZ A;  4XVB A;  4ELA A;  1THU A;  3E3S A;  3N03 A;  3V82 A;  3X3R A;  4ZG3 A;  3V84 A;  3VCH A;  1LR2 A;  1LR3 A;  5LN0 A;  3VCJ A;  3VCI A;  2BLR A;  5LH6 A;  5FGX A;  5KW0 A;  4TVT A;  5KW8 A;  3V88 A;  5KW3 A;  4DC6 A;  4BAL A;  3E0A A;  3GD9 A;  5KVZ A;  5LH3 A;  5LMH A;  2VI4 A;  1Z3Q A;  5LH1 A;  3X3Q A;  3DZR A;  5AMZ A;  3WXS A;  3V87 A;  2OQN A;  5KVW A;  4EKA A;  3X3P A;  3VJQ A;  5KW7 A;  1LXZ A;  4EKO A;  3DZN A;  1AUN A;  5JVX A;  3AL7 A;  5LH7 A;  1PP3 A;  5KVX A;  3V7V A;  2D8O A;  2A7I X;  4DIY A;  3ZEJ A;  5T3G A;  2G4Y A;  4BAR A;  4EK0 A;  4ZXR A;  3VCG A;  4JRU A;  3VHF A;  5L4R A;  4EKB A;  4L5H A;  3WOU A;  3ZS3 A;  5A47 A;  3VCK A;  3GD0 A;  5K7Q A;  5LH5 A;  3ALD A;  3X3O A;  2I0W A;  3VCE A;  4EL3 A;  1RQW A;  3X3T A;  4EL7 A;  4DC5 A;  3QY5 A; 
#chains in the Genus database with same CATH homology
 5FGT A;  4EL2 A;  2VHK A;  4L2J A;  2PE7 A;  4BCT A;  3DZP A;  3G7M A;  1THV A;  1LY0 A;  4DJ1 A;  2WBZ A;  2VU7 A;  3VHG A;  4AXR A;  3X3S A;  4C3C A;  5KW5 A;  4AXU A;  2VU6 A;  4EKH A;  3N02 A;  5KW4 A;  1PCV A;  1DU5 A;  3V8A A;  2VHR A;  4EKT A;  2BLU A;  2VI3 A;  3AOK A;  2AHN A;  2D8P A;  2VI2 A;  2VI1 A;  5AVG A;  5LH0 A;  4MBT A;  1THW A;  4DJ0 A;  4DIZ A;  4XVB A;  4ELA A;  1THU A;  3E3S A;  3N03 A;  3V82 A;  3X3R A;  4ZG3 A;  3V84 A;  3VCH A;  1LR2 A;  1LR3 A;  5LN0 A;  3VCJ A;  3VCI A;  2BLR A;  5LH6 A;  5FGX A;  5KW0 A;  4TVT A;  5KW8 A;  3V88 A;  5KW3 A;  4DC6 A;  4BAL A;  3E0A A;  3GD9 A;  5KVZ A;  5LH3 A;  5LMH A;  2VI4 A;  1Z3Q A;  5LH1 A;  3X3Q A;  3DZR A;  5AMZ A;  3WXS A;  3V87 A;  2OQN A;  5KVW A;  4EKA A;  3X3P A;  3VJQ A;  5KW7 A;  1LXZ A;  4EKO A;  3DZN A;  1AUN A;  5JVX A;  3AL7 A;  5LH7 A;  1PP3 A;  5KVX A;  3V7V A;  2D8O A;  2A7I X;  4DIY A;  3ZEJ A;  5T3G A;  2G4Y A;  4BAR A;  4EK0 A;  4ZXR A;  3VCG A;  4JRU A;  3VHF A;  5L4R A;  4EKB A;  4L5H A;  3WOU A;  3ZS3 A;  5A47 A;  3VCK A;  3GD0 A;  5K7Q A;  5LH5 A;  3ALD A;  3X3O A;  2I0W A;  3VCE A;  4EL3 A;  1RQW A;  3X3T A;  4EL7 A;  4DC5 A;  3QY5 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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