6GAT | Genus

Total Genus 7

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	7
sequence length	66
structure length	66
Chain Sequence	MKNGEQNGPTTCTNCFTQTTPVWRRNPEGQPLCNACGLFLKLHGVVRPLSLKTDVIKKRNRNSANS

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 66 atoms

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1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

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66 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Transcription/dna
source organism	Emericella nidulans
publication title	The solution structure of the Leu22-->Val mutant AREA DNA binding domain complexed with a TGATAG core element defines a role for hydrophobic packing in the determination of specificity. pubmed doi rcsb
molecule keywords	DNA (5'-D(CPAPGPTPGPAPTPAPGPAPGPAP*C)-3')
total genus	7
structure length	66
sequence length	66
ec nomenclature
pdb deposition date	1997-11-07

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00320	GATA	GATA zinc finger

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.50.10	Alpha Beta	2-Layer Sandwich	Erythroid Transcription Factor GATA-1; Chain A	Erythroid Transcription Factor GATA-1, subunit A	6gatA00

5E6CA 1KB4A 2EBLA 3GATA 1KB6A 3G97A 2GATA 1HCPA 2M9WA 3G6PA 1GATA 1GDCA 1LV3A 3FYLA 1HCQA 3DFXA 4HN6A 1LATA 4OV7A 4NQAB 4CN3D 4GATA 5EMCA 1CITA 2VUSI 5CC1A 2FF0A 3G8XA 5L0MA 4HC7A 5CBXA 3DZUD 3G6QA 2A66A 3E00D 4HC9A 4TNTA 3G9IA 3DZYA 4IQRA 5E69A 1DSZA 4OLNA 4CN2C 3M9EA 3G8UA 1RXRA 1GNFA 4CN7A 1R4OA 3CBBA 1A6YA 1HRAA 4ONDA 3G9JA 1DSZB 4HN5A 4OORA 3G6UA 5CC0A 3G99A 1R4IA 4CN3A 5KRBB 2ENVA 4CN5A 1R0OA 5EMQA 1RGDA 2KAEA 1GA5A 5CBYA 5E6AA 2C7AA 1R0OB 1R4RA 1GLUA 6GATA 1GAUA 2HANA 2NLLA 5E6BA 5EMPA 1KB2A 5GATA 1R0NA 4HCAA 1BY4A 3G6RA 3DFVC 2VUTI 1YNWA 5E6DA 3G9MA 2HANB 2NLLB 3DZUA 3G9OA 3G9PA 3E00A 3VD6C 1R0NB 1HLZA 4TMAI 3DZYD 1LO1A 7GATA 2GDAA 3VEKC 5CBZA 3G6TA 1YNWB 2VUUI 4AA6A
chains in the Genus database with same CATH superfamily

5E6CA 1KB4A 2EBLA 3GATA 1KB6A 3G97A 2GATA 1HCPA 2M9WA 3G6PA 1GATA 1GDCA 1LV3A 3FYLA 1HCQA 3DFXA 4HN6A 1LATA 4OV7A 4NQAB 4CN3D 4GATA 5EMCA 1CITA 2VUSI 5CC1A 2FF0A 3G8XA 5L0MA 4HC7A 5CBXA 3DZUD 3G6QA 3G27A 2A66A 3E00D 4HC9A 4TNTA 3G9IA 3DZYA 4IQRA 5E69A 1DSZA 4OLNA 4CN2C 3M9EA 3G8UA 1RXRA 1GNFA 4CN7A 1R4OA 3CBBA 2DS6A 1A6YA 1HRAA 4ONDA 3G9JA 1DSZB 4HN5A 4OORA 3G6UA 5CC0A 3G99A 1R4IA 4CN3A 5KRBB 2ENVA 4CN5A 1R0OA 5EMQA 1RGDA 2DS8A 2KAEA 1GA5A 5CBYA 5E6AA 2C7AA 1R0OB 1R4RA 1GLUA 6GATA 1GAUA 2HANA 2NLLA 5E6BA 5EMPA 1KB2A 5GATA 1R0NA 4HCAA 1BY4A 3G6RA 3DFVC 2VUTI 1YNWA 5E6DA 3G9MA 2HANB 2NLLB 3DZUA 3G9OA 3G9PA 3E00A 2DS5A 3VD6C 1R0NB 1HLZA 4TMAI 3DZYD 1LO1A 7GATA 2GDAA 3VEKC 5CBZA 3G6TA 1YNWB 2VUUI 4AA6A
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 5E6C A;  1KB4 A;  2EBL A;  3GAT A;  1KB6 A;  3G97 A;  2GAT A;  1HCP A;  2M9W A;  3G6P A;  1GAT A;  1GDC A;  1LV3 A;  3FYL A;  1HCQ A;  3DFX A;  4HN6 A;  1LAT A;  4OV7 A;  4NQA B;  4CN3 D;  4GAT A;  5EMC A;  1CIT A;  2VUS I;  5CC1 A;  2FF0 A;  3G8X A;  5L0M A;  4HC7 A;  5CBX A;  3DZU D;  3G6Q A;  2A66 A;  3E00 D;  4HC9 A;  4TNT A;  3G9I A;  3DZY A;  4IQR A;  5E69 A;  1DSZ A;  4OLN A;  4CN2 C;  3M9E A;  3G8U A;  1RXR A;  1GNF A;  4CN7 A;  1R4O A;  3CBB A;  1A6Y A;  1HRA A;  4OND A;  3G9J A;  1DSZ B;  4HN5 A;  4OOR A;  3G6U A;  5CC0 A;  3G99 A;  1R4I A;  4CN3 A;  5KRB B;  2ENV A;  4CN5 A;  1R0O A;  5EMQ A;  1RGD A;  2KAE A;  1GA5 A;  5CBY A;  5E6A A;  2C7A A;  1R0O B;  1R4R A;  1GLU A;  6GAT A;  1GAU A;  2HAN A;  2NLL A;  5E6B A;  5EMP A;  1KB2 A;  5GAT A;  1R0N A;  4HCA A;  1BY4 A;  3G6R A;  3DFV C;  2VUT I;  1YNW A;  5E6D A;  3G9M A;  2HAN B;  2NLL B;  3DZU A;  3G9O A;  3G9P A;  3E00 A;  3VD6 C;  1R0N B;  1HLZ A;  4TMA I;  3DZY D;  1LO1 A;  7GAT A;  2GDA A;  3VEK C;  5CBZ A;  3G6T A;  1YNW B;  2VUU I;  4AA6 A; 
#chains in the Genus database with same CATH topology
 5E6C A;  1KB4 A;  2EBL A;  3GAT A;  1KB6 A;  3G97 A;  2GAT A;  1HCP A;  2M9W A;  3G6P A;  1GAT A;  1GDC A;  1LV3 A;  3FYL A;  1HCQ A;  3DFX A;  4HN6 A;  1LAT A;  4OV7 A;  4NQA B;  4CN3 D;  4GAT A;  5EMC A;  1CIT A;  2VUS I;  5CC1 A;  2FF0 A;  3G8X A;  5L0M A;  4HC7 A;  5CBX A;  3DZU D;  3G6Q A;  3G27 A;  2A66 A;  3E00 D;  4HC9 A;  4TNT A;  3G9I A;  3DZY A;  4IQR A;  5E69 A;  1DSZ A;  4OLN A;  4CN2 C;  3M9E A;  3G8U A;  1RXR A;  1GNF A;  4CN7 A;  1R4O A;  3CBB A;  2DS6 A;  1A6Y A;  1HRA A;  4OND A;  3G9J A;  1DSZ B;  4HN5 A;  4OOR A;  3G6U A;  5CC0 A;  3G99 A;  1R4I A;  4CN3 A;  5KRB B;  2ENV A;  4CN5 A;  1R0O A;  5EMQ A;  1RGD A;  2DS8 A;  2KAE A;  1GA5 A;  5CBY A;  5E6A A;  2C7A A;  1R0O B;  1R4R A;  1GLU A;  6GAT A;  1GAU A;  2HAN A;  2NLL A;  5E6B A;  5EMP A;  1KB2 A;  5GAT A;  1R0N A;  4HCA A;  1BY4 A;  3G6R A;  3DFV C;  2VUT I;  1YNW A;  5E6D A;  3G9M A;  2HAN B;  2NLL B;  3DZU A;  3G9O A;  3G9P A;  3E00 A;  2DS5 A;  3VD6 C;  1R0N B;  1HLZ A;  4TMA I;  3DZY D;  1LO1 A;  7GAT A;  2GDA A;  3VEK C;  5CBZ A;  3G6T A;  1YNW B;  2VUU I;  4AA6 A; 
#chains in the Genus database with same CATH homology
 5E6C A;  1KB4 A;  2EBL A;  3GAT A;  1KB6 A;  3G97 A;  2GAT A;  1HCP A;  2M9W A;  3G6P A;  1GAT A;  1GDC A;  1LV3 A;  3FYL A;  1HCQ A;  3DFX A;  4HN6 A;  1LAT A;  4OV7 A;  4NQA B;  4CN3 D;  4GAT A;  5EMC A;  1CIT A;  2VUS I;  5CC1 A;  2FF0 A;  3G8X A;  5L0M A;  4HC7 A;  5CBX A;  3DZU D;  3G6Q A;  2A66 A;  3E00 D;  4HC9 A;  4TNT A;  3G9I A;  3DZY A;  4IQR A;  5E69 A;  1DSZ A;  4OLN A;  4CN2 C;  3M9E A;  3G8U A;  1RXR A;  1GNF A;  4CN7 A;  1R4O A;  3CBB A;  1A6Y A;  1HRA A;  4OND A;  3G9J A;  1DSZ B;  4HN5 A;  4OOR A;  3G6U A;  5CC0 A;  3G99 A;  1R4I A;  4CN3 A;  5KRB B;  2ENV A;  4CN5 A;  1R0O A;  5EMQ A;  1RGD A;  2KAE A;  1GA5 A;  5CBY A;  5E6A A;  2C7A A;  1R0O B;  1R4R A;  1GLU A;  6GAT A;  1GAU A;  2HAN A;  2NLL A;  5E6B A;  5EMP A;  1KB2 A;  5GAT A;  1R0N A;  4HCA A;  1BY4 A;  3G6R A;  3DFV C;  2VUT I;  1YNW A;  5E6D A;  3G9M A;  2HAN B;  2NLL B;  3DZU A;  3G9O A;  3G9P A;  3E00 A;  3VD6 C;  1R0N B;  1HLZ A;  4TMA I;  3DZY D;  1LO1 A;  7GAT A;  2GDA A;  3VEK C;  5CBZ A;  3G6T A;  1YNW B;  2VUU I;  4AA6 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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6GATA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations