7GAT | Genus

Total Genus 6

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	6
sequence length	66
structure length	66
Chain Sequence	MKNGEQNGPTTCTNCFTQTTPVWRRNPEGQPLCNACGLFLKLHGVVRPLSLKTDVIKKRNRNSANS

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 66 atoms

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1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

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66 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Transcription/dna
source organism	Emericella nidulans
publication title	The solution structure of the Leu22-->Val mutant AREA DNA binding domain complexed with a TGATAG core element defines a role for hydrophobic packing in the determination of specificity. pubmed doi rcsb
molecule keywords	DNA (5'-D(CPAPGPTPGPAPTPAPGPAPGPAP*C)-3')
total genus	6
structure length	66
sequence length	66
ec nomenclature
pdb deposition date	1997-11-07

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00320	GATA	GATA zinc finger

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.50.10	Alpha Beta	2-Layer Sandwich	Erythroid Transcription Factor GATA-1; Chain A	Erythroid Transcription Factor GATA-1, subunit A	7gatA00

3M9EA 1R0NB 2VUUI 1A6YA 5KRBB 4HC7A 2HANA 1HCQA 3DFVC 3G97A 1CITA 2VUSI 1LV3A 3G9MA 2NLLA 5CC1A 4HC9A 4CN7A 1GLUA 1LATA 3G8XA 2M9WA 5GATA 1R0OA 3G6PA 1LO1A 4HN6A 4TMAI 4ONDA 4HCAA 5E6DA 1R4OA 3E00D 1KB4A 4CN3D 4CN2C 5CBYA 1HRAA 4AA6A 3G6UA 1R4RA 5E6BA 4OV7A 5L0MA 3CBBA 5E69A 1GATA 1DSZA 1YNWA 3DZYD 1KB2A 1R0NA 3E00A 1KB6A 5CBXA 3G9JA 1GDCA 1GNFA 4CN3A 2FF0A 2EBLA 1RGDA 2NLLB 4IQRA 2KAEA 3G6TA 1GA5A 4GATA 3FYLA 1R0OB 3DFXA 5CBZA 4OORA 3G6RA 4CN5A 3DZUD 1RXRA 5EMQA 5E6CA 3DZYA 2VUTI 5EMPA 2C7AA 3G9PA 3VEKC 3G9IA 2HANB 5CC0A 1BY4A 3VD6C 7GATA 3GATA 2ENVA 2A66A 4TNTA 5E6AA 2GATA 1HLZA 3DZUA 4HN5A 2GDAA 1HCPA 3G9OA 6GATA 3G6QA 3G8UA 1DSZB 1YNWB 1R4IA 1GAUA 4NQAB 5EMCA 3G99A 4OLNA
chains in the Genus database with same CATH superfamily

3M9EA 1R0NB 2VUUI 1A6YA 5KRBB 4HC7A 2HANA 1HCQA 3DFVC 3G97A 1CITA 3G27A 2VUSI 1LV3A 3G9MA 2NLLA 5CC1A 4HC9A 4CN7A 1GLUA 1LATA 3G8XA 2M9WA 5GATA 1R0OA 3G6PA 1LO1A 4HN6A 4TMAI 4ONDA 4HCAA 5E6DA 1R4OA 3E00D 1KB4A 4CN3D 4CN2C 5CBYA 2DS5A 1HRAA 4AA6A 3G6UA 1R4RA 5E6BA 2DS6A 4OV7A 5L0MA 3CBBA 5E69A 1GATA 1DSZA 1YNWA 3DZYD 1KB2A 1R0NA 3E00A 1KB6A 5CBXA 3G9JA 1GDCA 1GNFA 4CN3A 2FF0A 2EBLA 1RGDA 2NLLB 4IQRA 2KAEA 3G6TA 1GA5A 4GATA 3FYLA 1R0OB 3DFXA 5CBZA 4OORA 3G6RA 4CN5A 3DZUD 1RXRA 5EMQA 5E6CA 3DZYA 2VUTI 5EMPA 2C7AA 3G9PA 3VEKC 3G9IA 2HANB 5CC0A 1BY4A 3VD6C 7GATA 3GATA 2ENVA 2A66A 2DS8A 5E6AA 4TNTA 2GATA 1HLZA 3DZUA 4HN5A 2GDAA 1HCPA 3G9OA 6GATA 3G6QA 3G8UA 1DSZB 1YNWB 1R4IA 1GAUA 4NQAB 5EMCA 3G99A 4OLNA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 3M9E A;  1R0N B;  2VUU I;  1A6Y A;  5KRB B;  4HC7 A;  2HAN A;  1HCQ A;  3DFV C;  3G97 A;  1CIT A;  2VUS I;  1LV3 A;  3G9M A;  2NLL A;  5CC1 A;  4HC9 A;  4CN7 A;  1GLU A;  1LAT A;  3G8X A;  2M9W A;  5GAT A;  1R0O A;  3G6P A;  1LO1 A;  4HN6 A;  4TMA I;  4OND A;  4HCA A;  5E6D A;  1R4O A;  3E00 D;  1KB4 A;  4CN3 D;  4CN2 C;  5CBY A;  1HRA A;  4AA6 A;  3G6U A;  1R4R A;  5E6B A;  4OV7 A;  5L0M A;  3CBB A;  5E69 A;  1GAT A;  1DSZ A;  1YNW A;  3DZY D;  1KB2 A;  1R0N A;  3E00 A;  1KB6 A;  5CBX A;  3G9J A;  1GDC A;  1GNF A;  4CN3 A;  2FF0 A;  2EBL A;  1RGD A;  2NLL B;  4IQR A;  2KAE A;  3G6T A;  1GA5 A;  4GAT A;  3FYL A;  1R0O B;  3DFX A;  5CBZ A;  4OOR A;  3G6R A;  4CN5 A;  3DZU D;  1RXR A;  5EMQ A;  5E6C A;  3DZY A;  2VUT I;  5EMP A;  2C7A A;  3G9P A;  3VEK C;  3G9I A;  2HAN B;  5CC0 A;  1BY4 A;  3VD6 C;  7GAT A;  3GAT A;  2ENV A;  2A66 A;  4TNT A;  5E6A A;  2GAT A;  1HLZ A;  3DZU A;  4HN5 A;  2GDA A;  1HCP A;  3G9O A;  6GAT A;  3G6Q A;  3G8U A;  1DSZ B;  1YNW B;  1R4I A;  1GAU A;  4NQA B;  5EMC A;  3G99 A;  4OLN A; 
#chains in the Genus database with same CATH topology
 3M9E A;  1R0N B;  2VUU I;  1A6Y A;  5KRB B;  4HC7 A;  2HAN A;  1HCQ A;  3DFV C;  3G97 A;  1CIT A;  3G27 A;  2VUS I;  1LV3 A;  3G9M A;  2NLL A;  5CC1 A;  4HC9 A;  4CN7 A;  1GLU A;  1LAT A;  3G8X A;  2M9W A;  5GAT A;  1R0O A;  3G6P A;  1LO1 A;  4HN6 A;  4TMA I;  4OND A;  4HCA A;  5E6D A;  1R4O A;  3E00 D;  1KB4 A;  4CN3 D;  4CN2 C;  5CBY A;  2DS5 A;  1HRA A;  4AA6 A;  3G6U A;  1R4R A;  5E6B A;  2DS6 A;  4OV7 A;  5L0M A;  3CBB A;  5E69 A;  1GAT A;  1DSZ A;  1YNW A;  3DZY D;  1KB2 A;  1R0N A;  3E00 A;  1KB6 A;  5CBX A;  3G9J A;  1GDC A;  1GNF A;  4CN3 A;  2FF0 A;  2EBL A;  1RGD A;  2NLL B;  4IQR A;  2KAE A;  3G6T A;  1GA5 A;  4GAT A;  3FYL A;  1R0O B;  3DFX A;  5CBZ A;  4OOR A;  3G6R A;  4CN5 A;  3DZU D;  1RXR A;  5EMQ A;  5E6C A;  3DZY A;  2VUT I;  5EMP A;  2C7A A;  3G9P A;  3VEK C;  3G9I A;  2HAN B;  5CC0 A;  1BY4 A;  3VD6 C;  7GAT A;  3GAT A;  2ENV A;  2A66 A;  2DS8 A;  5E6A A;  4TNT A;  2GAT A;  1HLZ A;  3DZU A;  4HN5 A;  2GDA A;  1HCP A;  3G9O A;  6GAT A;  3G6Q A;  3G8U A;  1DSZ B;  1YNW B;  1R4I A;  1GAU A;  4NQA B;  5EMC A;  3G99 A;  4OLN A; 
#chains in the Genus database with same CATH homology
 3M9E A;  1R0N B;  2VUU I;  1A6Y A;  5KRB B;  4HC7 A;  2HAN A;  1HCQ A;  3DFV C;  3G97 A;  1CIT A;  2VUS I;  1LV3 A;  3G9M A;  2NLL A;  5CC1 A;  4HC9 A;  4CN7 A;  1GLU A;  1LAT A;  3G8X A;  2M9W A;  5GAT A;  1R0O A;  3G6P A;  1LO1 A;  4HN6 A;  4TMA I;  4OND A;  4HCA A;  5E6D A;  1R4O A;  3E00 D;  1KB4 A;  4CN3 D;  4CN2 C;  5CBY A;  1HRA A;  4AA6 A;  3G6U A;  1R4R A;  5E6B A;  4OV7 A;  5L0M A;  3CBB A;  5E69 A;  1GAT A;  1DSZ A;  1YNW A;  3DZY D;  1KB2 A;  1R0N A;  3E00 A;  1KB6 A;  5CBX A;  3G9J A;  1GDC A;  1GNF A;  4CN3 A;  2FF0 A;  2EBL A;  1RGD A;  2NLL B;  4IQR A;  2KAE A;  3G6T A;  1GA5 A;  4GAT A;  3FYL A;  1R0O B;  3DFX A;  5CBZ A;  4OOR A;  3G6R A;  4CN5 A;  3DZU D;  1RXR A;  5EMQ A;  5E6C A;  3DZY A;  2VUT I;  5EMP A;  2C7A A;  3G9P A;  3VEK C;  3G9I A;  2HAN B;  5CC0 A;  1BY4 A;  3VD6 C;  7GAT A;  3GAT A;  2ENV A;  2A66 A;  4TNT A;  5E6A A;  2GAT A;  1HLZ A;  3DZU A;  4HN5 A;  2GDA A;  1HCP A;  3G9O A;  6GAT A;  3G6Q A;  3G8U A;  1DSZ B;  1YNW B;  1R4I A;  1GAU A;  4NQA B;  5EMC A;  3G99 A;  4OLN A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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7GATA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations