1GG2G

G protein heterotrimer mutant gi_alpha_1(g203a) beta_1 gamma_2 with gdp bound
Total Genus 14
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
14
sequence length
54
structure length
54
Chain Sequence
SIAQARKLVEQLKMEANIDRIKVSKAAADLMAYCEAHAKEDPLLTPVPASENPF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
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molecule tags Complex (gtp-binding/transducer)
molecule keywords G PROTEIN GI ALPHA 1
publication title The structure of the G protein heterotrimer Gi alpha 1 beta 1 gamma 2.
pubmed doi rcsb
source organism Rattus norvegicus
total genus 14
structure length 54
sequence length 54
ec nomenclature
pdb deposition date 1996-11-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
G PF00631 G-gamma GGL domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
4.10.260.10 Few Secondary Structures Irregular G Protein Gi Gamma 2 Transducin (heterotrimeric G protein), gamma chain 1gg2G00
5HE0G 5TDHG 4MK0G 1GP2G 1XHMB 3AH8G 4PNKG 3PVWG 3V5WG 3SN6G 2BCJG 3PVUG 5HE1G 1GG2G 1A0RG 1B9YB 3PSCG 2PBIA 1GOTG 2TRCG 3KRXG 5HE3G 5KDOG 1B9XB 3KRWG 3CIKG 5HE2G 4KFMG 1OMWG 1TBGE
chains in the Genus database with same CATH superfamily
5HE0G 5TDHG 4MK0G 1GP2G 1XHMB 3AH8G 4PNKG 3PVWG 3V5WG 1IOJA 3SN6G 2BCJG 3PVUG 5HE1G 1GG2G 1A0RG 1B9YB 3PSCG 2PBIA 1GOTG 2TRCG 3KRXG 5HE3G 1HFES 1B9XB 5KDOG 3KRWG 3CIKG 5HE2G 4KFMG 1OMWG 1TBGE
chains in the Genus database with same CATH topology
5HE0G 5TDHG 4MK0G 1GP2G 1XHMB 3AH8G 4PNKG 3PVWG 3V5WG 3SN6G 2BCJG 3PVUG 5HE1G 1GG2G 1A0RG 1B9YB 3PSCG 2PBIA 1GOTG 2TRCG 3KRXG 5HE3G 5KDOG 1B9XB 3KRWG 3CIKG 5HE2G 4KFMG 1OMWG 1TBGE
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 5HE0 G;  5TDH G;  4MK0 G;  1GP2 G;  1XHM B;  3AH8 G;  4PNK G;  3PVW G;  3V5W G;  3SN6 G;  2BCJ G;  3PVU G;  5HE1 G;  1GG2 G;  1A0R G;  1B9Y B;  3PSC G;  2PBI A;  1GOT G;  2TRC G;  3KRX G;  5HE3 G;  5KDO G;  1B9X B;  3KRW G;  3CIK G;  5HE2 G;  4KFM G;  1OMW G;  1TBG E; 
#chains in the Genus database with same CATH topology
 5HE0 G;  5TDH G;  4MK0 G;  1GP2 G;  1XHM B;  3AH8 G;  4PNK G;  3PVW G;  3V5W G;  1IOJ A;  3SN6 G;  2BCJ G;  3PVU G;  5HE1 G;  1GG2 G;  1A0R G;  1B9Y B;  3PSC G;  2PBI A;  1GOT G;  2TRC G;  3KRX G;  5HE3 G;  1HFE S;  1B9X B;  5KDO G;  3KRW G;  3CIK G;  5HE2 G;  4KFM G;  1OMW G;  1TBG E; 
#chains in the Genus database with same CATH homology
 5HE0 G;  5TDH G;  4MK0 G;  1GP2 G;  1XHM B;  3AH8 G;  4PNK G;  3PVW G;  3V5W G;  3SN6 G;  2BCJ G;  3PVU G;  5HE1 G;  1GG2 G;  1A0R G;  1B9Y B;  3PSC G;  2PBI A;  1GOT G;  2TRC G;  3KRX G;  5HE3 G;  5KDO G;  1B9X B;  3KRW G;  3CIK G;  5HE2 G;  4KFM G;  1OMW G;  1TBG E;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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