1GP2G

G protein heterotrimer gi_alpha_1 beta_1 gamma_2 with gdp bound
Total Genus 13
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
13
sequence length
54
structure length
54
Chain Sequence
SIAQARKLVEQLKMEANIDRIKVSKAAADLMAYCEAHAKEDPLLTPVPASENPF
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Complex (gtp-binding/transducer)
molecule keywords G PROTEIN GI ALPHA 1
publication title The structure of the G protein heterotrimer Gi alpha 1 beta 1 gamma 2.
pubmed doi rcsb
source organism Rattus norvegicus
total genus 13
structure length 54
sequence length 54
ec nomenclature
pdb deposition date 1996-11-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
G PF00631 G-gamma GGL domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
4.10.260.10 Few Secondary Structures Irregular G Protein Gi Gamma 2 Transducin (heterotrimeric G protein), gamma chain 1gp2G00
3CIKG 1GOTG 1B9XB 3KRXG 1XHMB 3SN6G 5TDHG 1GG2G 1OMWG 5HE2G 1GP2G 5HE1G 5HE0G 2TRCG 4PNKG 3PVUG 1B9YB 5HE3G 3PVWG 3AH8G 4KFMG 3KRWG 2BCJG 1A0RG 4MK0G 2PBIA 5KDOG 3V5WG 1TBGE 3PSCG
chains in the Genus database with same CATH superfamily
3CIKG 1GOTG 1B9XB 3KRXG 1XHMB 3SN6G 5TDHG 1GG2G 1OMWG 5HE2G 1GP2G 5HE1G 5HE0G 2TRCG 4PNKG 3PVUG 1B9YB 1HFES 5HE3G 3PVWG 3AH8G 4KFMG 3KRWG 2BCJG 1A0RG 4MK0G 2PBIA 5KDOG 3V5WG 1TBGE 1IOJA 3PSCG
chains in the Genus database with same CATH topology
3CIKG 1GOTG 1B9XB 3KRXG 1XHMB 3SN6G 5TDHG 1GG2G 1OMWG 5HE2G 1GP2G 5HE1G 5HE0G 2TRCG 4PNKG 3PVUG 1B9YB 5HE3G 3PVWG 3AH8G 4KFMG 3KRWG 2BCJG 1A0RG 4MK0G 2PBIA 5KDOG 3V5WG 1TBGE 3PSCG
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 3CIK G;  1GOT G;  1B9X B;  3KRX G;  1XHM B;  3SN6 G;  5TDH G;  1GG2 G;  1OMW G;  5HE2 G;  1GP2 G;  5HE1 G;  5HE0 G;  2TRC G;  4PNK G;  3PVU G;  1B9Y B;  5HE3 G;  3PVW G;  3AH8 G;  4KFM G;  3KRW G;  2BCJ G;  1A0R G;  4MK0 G;  2PBI A;  5KDO G;  3V5W G;  1TBG E;  3PSC G; 
#chains in the Genus database with same CATH topology
 3CIK G;  1GOT G;  1B9X B;  3KRX G;  1XHM B;  3SN6 G;  5TDH G;  1GG2 G;  1OMW G;  5HE2 G;  1GP2 G;  5HE1 G;  5HE0 G;  2TRC G;  4PNK G;  3PVU G;  1B9Y B;  1HFE S;  5HE3 G;  3PVW G;  3AH8 G;  4KFM G;  3KRW G;  2BCJ G;  1A0R G;  4MK0 G;  2PBI A;  5KDO G;  3V5W G;  1TBG E;  1IOJ A;  3PSC G; 
#chains in the Genus database with same CATH homology
 3CIK G;  1GOT G;  1B9X B;  3KRX G;  1XHM B;  3SN6 G;  5TDH G;  1GG2 G;  1OMW G;  5HE2 G;  1GP2 G;  5HE1 G;  5HE0 G;  2TRC G;  4PNK G;  3PVU G;  1B9Y B;  5HE3 G;  3PVW G;  3AH8 G;  4KFM G;  3KRW G;  2BCJ G;  1A0R G;  4MK0 G;  2PBI A;  5KDO G;  3V5W G;  1TBG E;  3PSC G;
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...
How to cite