The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
53
|
sequence length |
183
|
structure length |
183
|
Chain Sequence |
MLTMKDIIRDGHPTLRQKAAELELPLTKEEKETLIAMREFLVNSQDEEIAKRYGLRSGVGLAAPQINISKRMIAVLIPDDGSGKSYDYMLVNPKIVSHSVQEAYLPTGEGCLSVDDNVAGLVHRHNRITIKAKDIEGNDIQLRLKGYPAIVFQHEIDHLNGVMFYDHIDKNHPLQPHTDAVEV
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule tags |
Hydrolase
|
| molecule keywords |
PEPTIDE DEFORMYLASE PDF1
|
| publication title |
The crystal structures of four peptide deformylases bound to the antibiotic actinonin reveal two distinct types: a platform for the structure-based design of antibacterial agents.
pubmed doi rcsb |
| source organism |
Staphylococcus aureus
|
| total genus |
53
|
| structure length |
183
|
| sequence length |
183
|
| chains with identical sequence |
B
|
| ec nomenclature |
ec
3.5.1.88: Peptide deformylase. |
| pdb deposition date | 2002-05-14 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF01327 | Pep_deformylase | Polypeptide deformylase |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | Alpha-Beta Complex | Peptide Deformylase | Peptide deformylase |
#chains in the Genus database with same CATH superfamily 3PN6 A; 1SZZ A; 5J46 A; 5CXJ A; 1DEF A; 3G5P A; 1XEM A; 3U04 A; 1LQY A; 3STR P; 3PN5 A; 3U7M A; 2AI8 A; 3G6N A; 1LME A; 2KMN A; 4JE7 A; 5CPD A; 1G2A A; 5JF1 A; 1BS5 A; 1Y6H A; 3U7N A; 1V3Y A; 5JF6 A; 5CP0 A; 2DEF A; 2AIE P; 3QU1 A; 3SVJ P; 3U7K A; 3G5K A; 4WXL A; 2EW5 A; 5JF7 A; 5JEY A; 1WS1 A; 1S17 A; 1VEY A; 3M6P A; 1ICJ A; 4JE8 A; 4AL3 A; 5JF5 A; 1LM6 A; 4EOX P; 5CX0 A; 3UWB A; 1RQC A; 1LRY A; 1RL4 A; 1BSJ A; 5T8Z A; 1LQW A; 1IX1 A; 2W3T A; 5CWY A; 4DR8 A; 1BS6 A; 5JEX A; 1VEZ A; 1LMH A; 4DR9 A; 3K6L A; 5JF3 A; 1XEN A; 5CVP A; 2OS0 A; 1VEV A; 4AL2 A; 2AI7 A; 3O3J A; 4WXK A; 3CMD A; 5CVQ A; 1BSK A; 1DFF A; 3CPM A; 4E9A A; 3E3U A; 1LRU A; 3M6R A; 5CY8 A; 1ZY0 A; 5CVK A; 2EW6 A; 1ZXZ A; 3SW8 P; 5JF4 A; 2AI9 A; 1SV2 A; 3PN3 A; 1N5N A; 5I2B A; 2AIA A; 1JYM A; 1Q1Y A; 1XEO A; 2OKL A; 5JF0 A; 5JF2 A; 4JE6 A; 3PN4 A; 4NT8 A; 1WS0 A; 1BSZ A; 1G27 A; 5JF8 A; 5CY7 A; 3M6Q A; 1BS7 A; 3UWA A; 2OS3 A; 1ZY1 A; 2EW7 A; 1LM4 A; 3L87 A; 3U7L A; 3M6O A; 1BS4 A; 4AZ4 A; 2W3U A; 5JEZ A; 5KOB A; 5CWX A; 5E5D A; 3OCA A; 1BS8 A; 3PN2 A; 4E9B A; 5HGW A; 2OS1 A; 3FWX A; #chains in the Genus database with same CATH topology 3PN6 A; 1SZZ A; 5J46 A; 5CXJ A; 1DEF A; 3G5P A; 1XEM A; 3U04 A; 1LQY A; 3STR P; 3PN5 A; 3U7M A; 2AI8 A; 3G6N A; 1LME A; 2KMN A; 4JE7 A; 5CPD A; 1G2A A; 5JF1 A; 1BS5 A; 1Y6H A; 3U7N A; 1V3Y A; 5JF6 A; 5CP0 A; 2DEF A; 2AIE P; 3QU1 A; 3SVJ P; 3U7K A; 3G5K A; 4WXL A; 2EW5 A; 5JF7 A; 5JEY A; 1WS1 A; 1S17 A; 1VEY A; 3M6P A; 1ICJ A; 4JE8 A; 4AL3 A; 5JF5 A; 1LM6 A; 4EOX P; 5CX0 A; 3UWB A; 1RQC A; 1LRY A; 1RL4 A; 1BSJ A; 5T8Z A; 1LQW A; 1IX1 A; 2W3T A; 5CWY A; 4DR8 A; 1BS6 A; 5JEX A; 1VEZ A; 1LMH A; 4DR9 A; 3K6L A; 5JF3 A; 1XEN A; 5CVP A; 2OS0 A; 1VEV A; 4AL2 A; 2AI7 A; 3O3J A; 4WXK A; 3CMD A; 5CVQ A; 1BSK A; 1DFF A; 3CPM A; 4E9A A; 3E3U A; 1LRU A; 3M6R A; 5CY8 A; 1ZY0 A; 5CVK A; 2EW6 A; 1ZXZ A; 3SW8 P; 5JF4 A; 2AI9 A; 1SV2 A; 3PN3 A; 1N5N A; 5I2B A; 2AIA A; 1JYM A; 1Q1Y A; 1XEO A; 2OKL A; 5JF0 A; 5JF2 A; 4JE6 A; 3PN4 A; 4NT8 A; 1WS0 A; 1BSZ A; 1G27 A; 5JF8 A; 5CY7 A; 3M6Q A; 1BS7 A; 3UWA A; 2OS3 A; 1ZY1 A; 2EW7 A; 1LM4 A; 3L87 A; 3U7L A; 3M6O A; 1BS4 A; 4AZ4 A; 2W3U A; 5JEZ A; 5KOB A; 5CWX A; 5E5D A; 3OCA A; 1BS8 A; 3PN2 A; 4E9B A; 5HGW A; 2OS1 A; 3FWX A; #chains in the Genus database with same CATH homology 3PN6 A; 1SZZ A; 5J46 A; 5CXJ A; 1DEF A; 3G5P A; 1XEM A; 3U04 A; 1LQY A; 3STR P; 3PN5 A; 3U7M A; 2AI8 A; 3G6N A; 1LME A; 2KMN A; 4JE7 A; 5CPD A; 1G2A A; 5JF1 A; 1BS5 A; 1Y6H A; 3U7N A; 1V3Y A; 5JF6 A; 5CP0 A; 2DEF A; 2AIE P; 3QU1 A; 3SVJ P; 3U7K A; 3G5K A; 4WXL A; 2EW5 A; 5JF7 A; 5JEY A; 1WS1 A; 1S17 A; 1VEY A; 3M6P A; 1ICJ A; 4JE8 A; 4AL3 A; 5JF5 A; 1LM6 A; 4EOX P; 5CX0 A; 3UWB A; 1RQC A; 1LRY A; 1RL4 A; 1BSJ A; 5T8Z A; 1LQW A; 1IX1 A; 2W3T A; 5CWY A; 4DR8 A; 1BS6 A; 5JEX A; 1VEZ A; 1LMH A; 4DR9 A; 3K6L A; 5JF3 A; 1XEN A; 5CVP A; 2OS0 A; 1VEV A; 4AL2 A; 2AI7 A; 3O3J A; 4WXK A; 3CMD A; 5CVQ A; 1BSK A; 1DFF A; 3CPM A; 4E9A A; 3E3U A; 1LRU A; 3M6R A; 5CY8 A; 1ZY0 A; 5CVK A; 2EW6 A; 1ZXZ A; 3SW8 P; 5JF4 A; 2AI9 A; 1SV2 A; 3PN3 A; 1N5N A; 5I2B A; 2AIA A; 1JYM A; 1Q1Y A; 1XEO A; 2OKL A; 5JF0 A; 5JF2 A; 4JE6 A; 3PN4 A; 4NT8 A; 1WS0 A; 1BSZ A; 1G27 A; 5JF8 A; 5CY7 A; 3M6Q A; 1BS7 A; 3UWA A; 2OS3 A; 1ZY1 A; 2EW7 A; 1LM4 A; 3L87 A; 3U7L A; 3M6O A; 1BS4 A; 4AZ4 A; 2W3U A; 5JEZ A; 5KOB A; 5CWX A; 5E5D A; 3OCA A; 1BS8 A; 3PN2 A; 4E9B A; 5HGW A; 2OS1 A; 3FWX A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
