4AL3A

Peptide deformylase (co-form) with mercaptoethanol
Total Genus 46
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
46
sequence length
162
structure length
161
Chain Sequence
SVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVIDVSENRDERLVLINPELLEKSGETGIEEGLSIPEQRALVPRAEKVKIRALDRDGKPFELEADGLLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEKLD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
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molecule tags Hydrolase
molecule keywords PEPTIDE DEFORMYLASE
publication title A Fret Enzyme-Based Probe for Monitoring Hydrogen Sulfide.
pubmed doi rcsb
source organism Escherichia coli
total genus 46
structure length 161
sequence length 162
ec nomenclature ec 3.5.1.88: Peptide deformylase.
pdb deposition date 2012-02-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01327 Pep_deformylase Polypeptide deformylase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.45.10 Alpha Beta Alpha-Beta Complex Peptide Deformylase Peptide deformylase 4al3A00
3SVJP 3PN6A 5JF2A 1WS0A 1ZXZA 1XEOA 4WXLA 5CVKA 4JE6A 3G5PA 5JF4A 5J46A 4JE7A 1SZZA 3M6OA 5CVQA 5JF7A 3PN2A 3PN3A 1RQCA 5CX0A 4E9AA 3M6PA 2OS3A 2AIEP 3E3UA 1RL4A 5CVPA 2KMNA 1LMEA 5CPDA 5I2BA 4AZ4A 5JEZA 1N5NA 1DEFA 2EW5A 4EOXP 5JEXA 1BS5A 4AL3A 4E9BA 1JYMA 1XENA 3STRP 1XEMA 2AI8A 5CP0A 3G5KA 1WS1A 5CXJA 1DFFA 1BSZA 1LQYA 5KOBA 2DEFA 2EW6A 5JF1A 3M6RA 1BSJA 2W3UA 3U7MA 4AL2A 3O3JA 1G2AA 5CWXA 2EW7A 3G6NA 1Q1YA 2OS1A 3OCAA 5JF0A 5T8ZA 4NT8A 5JEYA 3QU1A 5HGWA 1BS8A 3CMDA 1VEVA 1LM6A 1Y6HA 1SV2A 3M6QA 1LM4A 1BSKA 3UWAA 3U7NA 5JF3A 3SW8P 5JF6A 2AI7A 5E5DA 3L87A 1V3YA 2W3TA 1VEYA 1LMHA 1G27A 1IX1A 2OS0A 5JF5A 3PN4A 3CPMA 2OKLA 1ZY1A 1LRYA 1ICJA 2AIAA 1ZY0A 3UWBA 3U7LA 5CY8A 5CY7A 1S17A 1LQWA 4WXKA 2AI9A 3FWXA 1BS4A 1LRUA 5JF8A 4DR9A 1BS6A 4JE8A 1VEZA 1BS7A 3K6LA 3U04A 5CWYA 4DR8A 3PN5A 3U7KA
chains in the Genus database with same CATH superfamily
3SVJP 3PN6A 5JF2A 1WS0A 1ZXZA 1XEOA 4WXLA 5CVKA 4JE6A 3G5PA 5JF4A 5J46A 4JE7A 1SZZA 3M6OA 5CVQA 5JF7A 3PN2A 3PN3A 1RQCA 5CX0A 4E9AA 3M6PA 2OS3A 2AIEP 3E3UA 1RL4A 5CVPA 2KMNA 1LMEA 5CPDA 5I2BA 4AZ4A 5JEZA 1N5NA 1DEFA 2EW5A 4EOXP 5JEXA 1BS5A 4AL3A 4E9BA 1JYMA 1XENA 3STRP 1XEMA 2AI8A 5CP0A 3G5KA 1WS1A 5CXJA 1DFFA 1BSZA 1LQYA 5KOBA 2DEFA 2EW6A 5JF1A 3M6RA 1BSJA 2W3UA 3U7MA 4AL2A 3O3JA 1G2AA 5CWXA 2EW7A 3G6NA 1Q1YA 2OS1A 3OCAA 5JF0A 5T8ZA 4NT8A 5JEYA 3QU1A 5HGWA 1BS8A 3CMDA 1VEVA 1LM6A 1Y6HA 1SV2A 3M6QA 1LM4A 1BSKA 3UWAA 3U7NA 5JF3A 3SW8P 5JF6A 2AI7A 5E5DA 3L87A 1V3YA 2W3TA 1VEYA 1LMHA 1G27A 1IX1A 2OS0A 5JF5A 3PN4A 3CPMA 2OKLA 1ZY1A 1LRYA 1ICJA 2AIAA 1ZY0A 3UWBA 3U7LA 5CY8A 5CY7A 1S17A 1LQWA 4WXKA 2AI9A 3FWXA 1BS4A 1LRUA 5JF8A 4DR9A 1BS6A 4JE8A 1VEZA 1BS7A 3K6LA 3U04A 5CWYA 4DR8A 3PN5A 3U7KA
chains in the Genus database with same CATH topology
3SVJP 3PN6A 5JF2A 1WS0A 1ZXZA 1XEOA 4WXLA 5CVKA 4JE6A 3G5PA 5JF4A 5J46A 4JE7A 1SZZA 3M6OA 5CVQA 5JF7A 3PN2A 3PN3A 1RQCA 5CX0A 4E9AA 3M6PA 2OS3A 2AIEP 3E3UA 1RL4A 5CVPA 2KMNA 1LMEA 5CPDA 5I2BA 4AZ4A 5JEZA 1N5NA 1DEFA 2EW5A 4EOXP 5JEXA 1BS5A 4AL3A 4E9BA 1JYMA 1XENA 3STRP 1XEMA 2AI8A 5CP0A 3G5KA 1WS1A 5CXJA 1DFFA 1BSZA 1LQYA 5KOBA 2DEFA 2EW6A 5JF1A 3M6RA 1BSJA 2W3UA 3U7MA 4AL2A 3O3JA 1G2AA 5CWXA 2EW7A 3G6NA 1Q1YA 2OS1A 3OCAA 5JF0A 5T8ZA 4NT8A 5JEYA 3QU1A 5HGWA 1BS8A 3CMDA 1VEVA 1LM6A 1Y6HA 1SV2A 3M6QA 1LM4A 1BSKA 3UWAA 3U7NA 5JF3A 3SW8P 5JF6A 2AI7A 5E5DA 3L87A 1V3YA 2W3TA 1VEYA 1LMHA 1G27A 1IX1A 2OS0A 5JF5A 3PN4A 3CPMA 2OKLA 1ZY1A 1LRYA 1ICJA 2AIAA 1ZY0A 3UWBA 3U7LA 5CY8A 5CY7A 1S17A 1LQWA 4WXKA 2AI9A 3FWXA 1BS4A 1LRUA 5JF8A 4DR9A 1BS6A 4JE8A 1VEZA 1BS7A 3K6LA 3U04A 5CWYA 4DR8A 3PN5A 3U7KA
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 3SVJ P;  3PN6 A;  5JF2 A;  1WS0 A;  1ZXZ A;  1XEO A;  4WXL A;  5CVK A;  4JE6 A;  3G5P A;  5JF4 A;  5J46 A;  4JE7 A;  1SZZ A;  3M6O A;  5CVQ A;  5JF7 A;  3PN2 A;  3PN3 A;  1RQC A;  5CX0 A;  4E9A A;  3M6P A;  2OS3 A;  2AIE P;  3E3U A;  1RL4 A;  5CVP A;  2KMN A;  1LME A;  5CPD A;  5I2B A;  4AZ4 A;  5JEZ A;  1N5N A;  1DEF A;  2EW5 A;  4EOX P;  5JEX A;  1BS5 A;  4AL3 A;  4E9B A;  1JYM A;  1XEN A;  3STR P;  1XEM A;  2AI8 A;  5CP0 A;  3G5K A;  1WS1 A;  5CXJ A;  1DFF A;  1BSZ A;  1LQY A;  5KOB A;  2DEF A;  2EW6 A;  5JF1 A;  3M6R A;  1BSJ A;  2W3U A;  3U7M A;  4AL2 A;  3O3J A;  1G2A A;  5CWX A;  2EW7 A;  3G6N A;  1Q1Y A;  2OS1 A;  3OCA A;  5JF0 A;  5T8Z A;  4NT8 A;  5JEY A;  3QU1 A;  5HGW A;  1BS8 A;  3CMD A;  1VEV A;  1LM6 A;  1Y6H A;  1SV2 A;  3M6Q A;  1LM4 A;  1BSK A;  3UWA A;  3U7N A;  5JF3 A;  3SW8 P;  5JF6 A;  2AI7 A;  5E5D A;  3L87 A;  1V3Y A;  2W3T A;  1VEY A;  1LMH A;  1G27 A;  1IX1 A;  2OS0 A;  5JF5 A;  3PN4 A;  3CPM A;  2OKL A;  1ZY1 A;  1LRY A;  1ICJ A;  2AIA A;  1ZY0 A;  3UWB A;  3U7L A;  5CY8 A;  5CY7 A;  1S17 A;  1LQW A;  4WXK A;  2AI9 A;  3FWX A;  1BS4 A;  1LRU A;  5JF8 A;  4DR9 A;  1BS6 A;  4JE8 A;  1VEZ A;  1BS7 A;  3K6L A;  3U04 A;  5CWY A;  4DR8 A;  3PN5 A;  3U7K A; 
#chains in the Genus database with same CATH topology
 3SVJ P;  3PN6 A;  5JF2 A;  1WS0 A;  1ZXZ A;  1XEO A;  4WXL A;  5CVK A;  4JE6 A;  3G5P A;  5JF4 A;  5J46 A;  4JE7 A;  1SZZ A;  3M6O A;  5CVQ A;  5JF7 A;  3PN2 A;  3PN3 A;  1RQC A;  5CX0 A;  4E9A A;  3M6P A;  2OS3 A;  2AIE P;  3E3U A;  1RL4 A;  5CVP A;  2KMN A;  1LME A;  5CPD A;  5I2B A;  4AZ4 A;  5JEZ A;  1N5N A;  1DEF A;  2EW5 A;  4EOX P;  5JEX A;  1BS5 A;  4AL3 A;  4E9B A;  1JYM A;  1XEN A;  3STR P;  1XEM A;  2AI8 A;  5CP0 A;  3G5K A;  1WS1 A;  5CXJ A;  1DFF A;  1BSZ A;  1LQY A;  5KOB A;  2DEF A;  2EW6 A;  5JF1 A;  3M6R A;  1BSJ A;  2W3U A;  3U7M A;  4AL2 A;  3O3J A;  1G2A A;  5CWX A;  2EW7 A;  3G6N A;  1Q1Y A;  2OS1 A;  3OCA A;  5JF0 A;  5T8Z A;  4NT8 A;  5JEY A;  3QU1 A;  5HGW A;  1BS8 A;  3CMD A;  1VEV A;  1LM6 A;  1Y6H A;  1SV2 A;  3M6Q A;  1LM4 A;  1BSK A;  3UWA A;  3U7N A;  5JF3 A;  3SW8 P;  5JF6 A;  2AI7 A;  5E5D A;  3L87 A;  1V3Y A;  2W3T A;  1VEY A;  1LMH A;  1G27 A;  1IX1 A;  2OS0 A;  5JF5 A;  3PN4 A;  3CPM A;  2OKL A;  1ZY1 A;  1LRY A;  1ICJ A;  2AIA A;  1ZY0 A;  3UWB A;  3U7L A;  5CY8 A;  5CY7 A;  1S17 A;  1LQW A;  4WXK A;  2AI9 A;  3FWX A;  1BS4 A;  1LRU A;  5JF8 A;  4DR9 A;  1BS6 A;  4JE8 A;  1VEZ A;  1BS7 A;  3K6L A;  3U04 A;  5CWY A;  4DR8 A;  3PN5 A;  3U7K A; 
#chains in the Genus database with same CATH homology
 3SVJ P;  3PN6 A;  5JF2 A;  1WS0 A;  1ZXZ A;  1XEO A;  4WXL A;  5CVK A;  4JE6 A;  3G5P A;  5JF4 A;  5J46 A;  4JE7 A;  1SZZ A;  3M6O A;  5CVQ A;  5JF7 A;  3PN2 A;  3PN3 A;  1RQC A;  5CX0 A;  4E9A A;  3M6P A;  2OS3 A;  2AIE P;  3E3U A;  1RL4 A;  5CVP A;  2KMN A;  1LME A;  5CPD A;  5I2B A;  4AZ4 A;  5JEZ A;  1N5N A;  1DEF A;  2EW5 A;  4EOX P;  5JEX A;  1BS5 A;  4AL3 A;  4E9B A;  1JYM A;  1XEN A;  3STR P;  1XEM A;  2AI8 A;  5CP0 A;  3G5K A;  1WS1 A;  5CXJ A;  1DFF A;  1BSZ A;  1LQY A;  5KOB A;  2DEF A;  2EW6 A;  5JF1 A;  3M6R A;  1BSJ A;  2W3U A;  3U7M A;  4AL2 A;  3O3J A;  1G2A A;  5CWX A;  2EW7 A;  3G6N A;  1Q1Y A;  2OS1 A;  3OCA A;  5JF0 A;  5T8Z A;  4NT8 A;  5JEY A;  3QU1 A;  5HGW A;  1BS8 A;  3CMD A;  1VEV A;  1LM6 A;  1Y6H A;  1SV2 A;  3M6Q A;  1LM4 A;  1BSK A;  3UWA A;  3U7N A;  5JF3 A;  3SW8 P;  5JF6 A;  2AI7 A;  5E5D A;  3L87 A;  1V3Y A;  2W3T A;  1VEY A;  1LMH A;  1G27 A;  1IX1 A;  2OS0 A;  5JF5 A;  3PN4 A;  3CPM A;  2OKL A;  1ZY1 A;  1LRY A;  1ICJ A;  2AIA A;  1ZY0 A;  3UWB A;  3U7L A;  5CY8 A;  5CY7 A;  1S17 A;  1LQW A;  4WXK A;  2AI9 A;  3FWX A;  1BS4 A;  1LRU A;  5JF8 A;  4DR9 A;  1BS6 A;  4JE8 A;  1VEZ A;  1BS7 A;  3K6L A;  3U04 A;  5CWY A;  4DR8 A;  3PN5 A;  3U7K A;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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