2W3TA

Chloro complex of the ni-form of e.coli deformylase
Total Genus 51
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
51
sequence length
167
structure length
167
Chain Sequence
SVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVIDVSENRDERLVLINPELLEKSGETGIEEGCLSIPEQRALVPRAEKVKIRALDRDGKPFELEADGLLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEKLDRLKAR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords PEPTIDE DEFORMYLASE
publication title Structure of the Ni(II) Complex of Escherichia Coli Peptide Deformylase and Suggestions on Deformylase Activities Depending on Different Metal(II) Centres.
pubmed doi rcsb
source organism Escherichia coli
total genus 51
structure length 167
sequence length 167
ec nomenclature ec 3.5.1.88: Peptide deformylase.
pdb deposition date 2008-11-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01327 Pep_deformylase Polypeptide deformylase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.45.10 Alpha Beta Alpha-Beta Complex Peptide Deformylase Peptide deformylase 2w3tA00
3L87A 2AI8A 1Y6HA 3G5KA 3PN4A 5CWXA 2OS3A 4AZ4A 5CWYA 4WXLA 4EOXP 5KOBA 4NT8A 1V3YA 3E3UA 5CVKA 1VEZA 1XENA 2AIAA 1IX1A 2W3TA 3UWBA 3SVJP 1N5NA 3UWAA 4E9AA 1Q1YA 5CXJA 5CY8A 1SV2A 2EW7A 1LMHA 3OCAA 5JF1A 1WS0A 5JEYA 5JF0A 3M6PA 5CY7A 2EW6A 5I2BA 1BS7A 3FWXA 5JF7A 4E9BA 3M6OA 3STRP 2EW5A 1LQYA 5CX0A 3M6QA 1BS6A 5JEXA 1ICJA 1LQWA 1BS5A 5HGWA 5T8ZA 3O3JA 1LM4A 1XEMA 5JF3A 1BS4A 3U7LA 5JEZA 2W3UA 1BSJA 1RL4A 1RQCA 1WS1A 3U7KA 4JE8A 4WXKA 4DR9A 4AL3A 5JF4A 3QU1A 1JYMA 2DEFA 3G6NA 3M6RA 2AI7A 4JE6A 5CVPA 3SW8P 3K6LA 5J46A 1S17A 5JF6A 5JF2A 1SZZA 3G5PA 2KMNA 1G27A 5JF5A 1BSKA 4AL2A 1XEOA 2OS0A 3CPMA 5CVQA 4DR8A 1DFFA 3PN2A 3PN5A 1G2AA 2AI9A 4JE7A 5E5DA 1VEVA 1VEYA 1ZXZA 2OKLA 1BS8A 1DEFA 1ZY0A 1ZY1A 5JF8A 1LM6A 1LRYA 1LRUA 3U04A 3U7NA 3PN6A 1LMEA 5CPDA 3PN3A 3CMDA 2OS1A 1BSZA 2AIEP 5CP0A 3U7MA
chains in the Genus database with same CATH superfamily
3L87A 2AI8A 1Y6HA 3G5KA 3PN4A 5CWXA 2OS3A 4AZ4A 5CWYA 4WXLA 4EOXP 5KOBA 4NT8A 1V3YA 3E3UA 5CVKA 1VEZA 1XENA 2AIAA 1IX1A 2W3TA 3UWBA 3SVJP 1N5NA 3UWAA 4E9AA 1Q1YA 5CXJA 5CY8A 1SV2A 2EW7A 1LMHA 3OCAA 5JF1A 1WS0A 5JEYA 5JF0A 3M6PA 5CY7A 2EW6A 5I2BA 1BS7A 3FWXA 5JF7A 4E9BA 3M6OA 3STRP 2EW5A 1LQYA 5CX0A 3M6QA 1BS6A 5JEXA 1ICJA 1LQWA 1BS5A 5HGWA 5T8ZA 3O3JA 1LM4A 1XEMA 5JF3A 1BS4A 3U7LA 5JEZA 2W3UA 1BSJA 1RL4A 1RQCA 1WS1A 3U7KA 4JE8A 4WXKA 4DR9A 4AL3A 5JF4A 3QU1A 1JYMA 2DEFA 3G6NA 3M6RA 2AI7A 4JE6A 5CVPA 3SW8P 3K6LA 5J46A 1S17A 5JF6A 5JF2A 1SZZA 3G5PA 2KMNA 1G27A 5JF5A 1BSKA 4AL2A 1XEOA 2OS0A 3CPMA 5CVQA 4DR8A 1DFFA 3PN2A 3PN5A 1G2AA 2AI9A 4JE7A 5E5DA 1VEVA 1VEYA 1ZXZA 2OKLA 1BS8A 1DEFA 1ZY0A 1ZY1A 5JF8A 1LM6A 1LRYA 1LRUA 3U04A 3U7NA 3PN6A 1LMEA 5CPDA 3PN3A 3CMDA 2OS1A 1BSZA 2AIEP 5CP0A 3U7MA
chains in the Genus database with same CATH topology
3L87A 2AI8A 1Y6HA 3G5KA 3PN4A 5CWXA 2OS3A 4AZ4A 5CWYA 4WXLA 4EOXP 5KOBA 4NT8A 1V3YA 3E3UA 5CVKA 1VEZA 1XENA 2AIAA 1IX1A 2W3TA 3UWBA 3SVJP 1N5NA 3UWAA 4E9AA 1Q1YA 5CXJA 5CY8A 1SV2A 2EW7A 1LMHA 3OCAA 5JF1A 1WS0A 5JEYA 5JF0A 3M6PA 5CY7A 2EW6A 5I2BA 1BS7A 3FWXA 5JF7A 4E9BA 3M6OA 3STRP 2EW5A 1LQYA 5CX0A 3M6QA 1BS6A 5JEXA 1ICJA 1LQWA 1BS5A 5HGWA 5T8ZA 3O3JA 1LM4A 1XEMA 5JF3A 1BS4A 3U7LA 5JEZA 2W3UA 1BSJA 1RL4A 1RQCA 1WS1A 3U7KA 4JE8A 4WXKA 4DR9A 4AL3A 5JF4A 3QU1A 1JYMA 2DEFA 3G6NA 3M6RA 2AI7A 4JE6A 5CVPA 3SW8P 3K6LA 5J46A 1S17A 5JF6A 5JF2A 1SZZA 3G5PA 2KMNA 1G27A 5JF5A 1BSKA 4AL2A 1XEOA 2OS0A 3CPMA 5CVQA 4DR8A 1DFFA 3PN2A 3PN5A 1G2AA 2AI9A 4JE7A 5E5DA 1VEVA 1VEYA 1ZXZA 2OKLA 1BS8A 1DEFA 1ZY0A 1ZY1A 5JF8A 1LM6A 1LRYA 1LRUA 3U04A 3U7NA 3PN6A 1LMEA 5CPDA 3PN3A 3CMDA 2OS1A 1BSZA 2AIEP 5CP0A 3U7MA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3L87 A;  2AI8 A;  1Y6H A;  3G5K A;  3PN4 A;  5CWX A;  2OS3 A;  4AZ4 A;  5CWY A;  4WXL A;  4EOX P;  5KOB A;  4NT8 A;  1V3Y A;  3E3U A;  5CVK A;  1VEZ A;  1XEN A;  2AIA A;  1IX1 A;  2W3T A;  3UWB A;  3SVJ P;  1N5N A;  3UWA A;  4E9A A;  1Q1Y A;  5CXJ A;  5CY8 A;  1SV2 A;  2EW7 A;  1LMH A;  3OCA A;  5JF1 A;  1WS0 A;  5JEY A;  5JF0 A;  3M6P A;  5CY7 A;  2EW6 A;  5I2B A;  1BS7 A;  3FWX A;  5JF7 A;  4E9B A;  3M6O A;  3STR P;  2EW5 A;  1LQY A;  5CX0 A;  3M6Q A;  1BS6 A;  5JEX A;  1ICJ A;  1LQW A;  1BS5 A;  5HGW A;  5T8Z A;  3O3J A;  1LM4 A;  1XEM A;  5JF3 A;  1BS4 A;  3U7L A;  5JEZ A;  2W3U A;  1BSJ A;  1RL4 A;  1RQC A;  1WS1 A;  3U7K A;  4JE8 A;  4WXK A;  4DR9 A;  4AL3 A;  5JF4 A;  3QU1 A;  1JYM A;  2DEF A;  3G6N A;  3M6R A;  2AI7 A;  4JE6 A;  5CVP A;  3SW8 P;  3K6L A;  5J46 A;  1S17 A;  5JF6 A;  5JF2 A;  1SZZ A;  3G5P A;  2KMN A;  1G27 A;  5JF5 A;  1BSK A;  4AL2 A;  1XEO A;  2OS0 A;  3CPM A;  5CVQ A;  4DR8 A;  1DFF A;  3PN2 A;  3PN5 A;  1G2A A;  2AI9 A;  4JE7 A;  5E5D A;  1VEV A;  1VEY A;  1ZXZ A;  2OKL A;  1BS8 A;  1DEF A;  1ZY0 A;  1ZY1 A;  5JF8 A;  1LM6 A;  1LRY A;  1LRU A;  3U04 A;  3U7N A;  3PN6 A;  1LME A;  5CPD A;  3PN3 A;  3CMD A;  2OS1 A;  1BSZ A;  2AIE P;  5CP0 A;  3U7M A; 
#chains in the Genus database with same CATH topology
 3L87 A;  2AI8 A;  1Y6H A;  3G5K A;  3PN4 A;  5CWX A;  2OS3 A;  4AZ4 A;  5CWY A;  4WXL A;  4EOX P;  5KOB A;  4NT8 A;  1V3Y A;  3E3U A;  5CVK A;  1VEZ A;  1XEN A;  2AIA A;  1IX1 A;  2W3T A;  3UWB A;  3SVJ P;  1N5N A;  3UWA A;  4E9A A;  1Q1Y A;  5CXJ A;  5CY8 A;  1SV2 A;  2EW7 A;  1LMH A;  3OCA A;  5JF1 A;  1WS0 A;  5JEY A;  5JF0 A;  3M6P A;  5CY7 A;  2EW6 A;  5I2B A;  1BS7 A;  3FWX A;  5JF7 A;  4E9B A;  3M6O A;  3STR P;  2EW5 A;  1LQY A;  5CX0 A;  3M6Q A;  1BS6 A;  5JEX A;  1ICJ A;  1LQW A;  1BS5 A;  5HGW A;  5T8Z A;  3O3J A;  1LM4 A;  1XEM A;  5JF3 A;  1BS4 A;  3U7L A;  5JEZ A;  2W3U A;  1BSJ A;  1RL4 A;  1RQC A;  1WS1 A;  3U7K A;  4JE8 A;  4WXK A;  4DR9 A;  4AL3 A;  5JF4 A;  3QU1 A;  1JYM A;  2DEF A;  3G6N A;  3M6R A;  2AI7 A;  4JE6 A;  5CVP A;  3SW8 P;  3K6L A;  5J46 A;  1S17 A;  5JF6 A;  5JF2 A;  1SZZ A;  3G5P A;  2KMN A;  1G27 A;  5JF5 A;  1BSK A;  4AL2 A;  1XEO A;  2OS0 A;  3CPM A;  5CVQ A;  4DR8 A;  1DFF A;  3PN2 A;  3PN5 A;  1G2A A;  2AI9 A;  4JE7 A;  5E5D A;  1VEV A;  1VEY A;  1ZXZ A;  2OKL A;  1BS8 A;  1DEF A;  1ZY0 A;  1ZY1 A;  5JF8 A;  1LM6 A;  1LRY A;  1LRU A;  3U04 A;  3U7N A;  3PN6 A;  1LME A;  5CPD A;  3PN3 A;  3CMD A;  2OS1 A;  1BSZ A;  2AIE P;  5CP0 A;  3U7M A; 
#chains in the Genus database with same CATH homology
 3L87 A;  2AI8 A;  1Y6H A;  3G5K A;  3PN4 A;  5CWX A;  2OS3 A;  4AZ4 A;  5CWY A;  4WXL A;  4EOX P;  5KOB A;  4NT8 A;  1V3Y A;  3E3U A;  5CVK A;  1VEZ A;  1XEN A;  2AIA A;  1IX1 A;  2W3T A;  3UWB A;  3SVJ P;  1N5N A;  3UWA A;  4E9A A;  1Q1Y A;  5CXJ A;  5CY8 A;  1SV2 A;  2EW7 A;  1LMH A;  3OCA A;  5JF1 A;  1WS0 A;  5JEY A;  5JF0 A;  3M6P A;  5CY7 A;  2EW6 A;  5I2B A;  1BS7 A;  3FWX A;  5JF7 A;  4E9B A;  3M6O A;  3STR P;  2EW5 A;  1LQY A;  5CX0 A;  3M6Q A;  1BS6 A;  5JEX A;  1ICJ A;  1LQW A;  1BS5 A;  5HGW A;  5T8Z A;  3O3J A;  1LM4 A;  1XEM A;  5JF3 A;  1BS4 A;  3U7L A;  5JEZ A;  2W3U A;  1BSJ A;  1RL4 A;  1RQC A;  1WS1 A;  3U7K A;  4JE8 A;  4WXK A;  4DR9 A;  4AL3 A;  5JF4 A;  3QU1 A;  1JYM A;  2DEF A;  3G6N A;  3M6R A;  2AI7 A;  4JE6 A;  5CVP A;  3SW8 P;  3K6L A;  5J46 A;  1S17 A;  5JF6 A;  5JF2 A;  1SZZ A;  3G5P A;  2KMN A;  1G27 A;  5JF5 A;  1BSK A;  4AL2 A;  1XEO A;  2OS0 A;  3CPM A;  5CVQ A;  4DR8 A;  1DFF A;  3PN2 A;  3PN5 A;  1G2A A;  2AI9 A;  4JE7 A;  5E5D A;  1VEV A;  1VEY A;  1ZXZ A;  2OKL A;  1BS8 A;  1DEF A;  1ZY0 A;  1ZY1 A;  5JF8 A;  1LM6 A;  1LRY A;  1LRU A;  3U04 A;  3U7N A;  3PN6 A;  1LME A;  5CPD A;  3PN3 A;  3CMD A;  2OS1 A;  1BSZ A;  2AIE P;  5CP0 A;  3U7M A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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