2AIEP

S.pneumoniae polypeptide deformylase complexed with sb-505684
Total Genus 59
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
59
sequence length
202
structure length
194
Chain Sequence
SAIERIVKAAHLIDMCDIIREGNPSLRTVAEEVTFPLSDQEIILGEKMMQFLKHSQDPVMAEKMGLRGGVGLAAPQLDISKRIIAVLVPNIEAYDLEAIMYNPKIVSHSVQDAALGEGEGCLSVDRNVPGYVVRHARVTVDYFDKDGEKHRIKLKGYNSIVVQHEIDHINGIMFYDRINEKDPFAVKDGLLILE
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Hydrolase
molecule keywords Peptide deformylase
publication title Structural Variation and inhibitor binding in polypeptide deformylase from four different bacterial species
pubmed doi rcsb
source organism Streptococcus pneumoniae
total genus 59
structure length 194
sequence length 202
ec nomenclature ec 3.5.1.88: Peptide deformylase.
pdb deposition date 2005-07-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
P PF01327 Pep_deformylase Polypeptide deformylase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.45.10 Alpha Beta Alpha-Beta Complex Peptide Deformylase Peptide deformylase 2aieP00
2AI9A 3O3JA 1LM4A 3M6RA 3U7MA 3FWXA 3PN2A 5CPDA 5T8ZA 3PN5A 4NT8A 5CX0A 1XEMA 1RQCA 3G5PA 1DEFA 1ZXZA 5JF5A 2EW5A 5JF4A 5JF7A 2AIAA 4DR9A 1JYMA 5JF2A 2DEFA 5KOBA 3E3UA 4AL2A 1VEVA 1SZZA 2W3UA 1LQWA 3UWAA 2AIEP 4DR8A 5CVPA 1WS1A 1LM6A 1RL4A 3K6LA 3G5KA 1IX1A 2EW7A 1G27A 3STRP 2OS1A 5J46A 5JEYA 3U7LA 4AL3A 3UWBA 2AI8A 5JF6A 5CY8A 3SVJP 3PN3A 1S17A 1LMHA 3M6OA 1XEOA 1XENA 3CMDA 1VEYA 5CWXA 1LQYA 5HGWA 1LRYA 1DFFA 4WXKA 1BSKA 3U7NA 1BS8A 1BSZA 4JE7A 5JF8A 1LMEA 5JEXA 5CVQA 3L87A 3U04A 5JF3A 1N5NA 5CWYA 1WS0A 5I2BA 1VEZA 1ICJA 4E9AA 5CVKA 2EW6A 4WXLA 1SV2A 5JF1A 4JE6A 5CXJA 4JE8A 4AZ4A 3SW8P 2W3TA 3U7KA 5JF0A 1ZY1A 1LRUA 1Y6HA 1Q1YA 3PN6A 3G6NA 3CPMA 2OS3A 1G2AA 2OS0A 4E9BA 1ZY0A 3OCAA 3QU1A 1V3YA 5CP0A 2KMNA 5JEZA 3M6QA 2AI7A 5E5DA 1BS5A 1BS7A 3M6PA 2OKLA 4EOXP 1BS6A 1BS4A 5CY7A 3PN4A 1BSJA
chains in the Genus database with same CATH superfamily
2AI9A 3O3JA 1LM4A 3M6RA 3U7MA 3FWXA 3PN2A 5CPDA 5T8ZA 3PN5A 4NT8A 5CX0A 1XEMA 1RQCA 3G5PA 1DEFA 1ZXZA 5JF5A 2EW5A 5JF4A 5JF7A 2AIAA 4DR9A 1JYMA 5JF2A 2DEFA 5KOBA 3E3UA 4AL2A 1VEVA 1SZZA 2W3UA 1LQWA 3UWAA 2AIEP 4DR8A 5CVPA 1WS1A 1LM6A 1RL4A 3K6LA 3G5KA 1IX1A 2EW7A 1G27A 3STRP 2OS1A 5J46A 5JEYA 3U7LA 4AL3A 3UWBA 2AI8A 5JF6A 5CY8A 3SVJP 3PN3A 1S17A 1LMHA 3M6OA 1XEOA 1XENA 3CMDA 1VEYA 5CWXA 1LQYA 5HGWA 1LRYA 1DFFA 4WXKA 1BSKA 3U7NA 1BS8A 1BSZA 4JE7A 5JF8A 1LMEA 5JEXA 5CVQA 3L87A 3U04A 5JF3A 1N5NA 5CWYA 1WS0A 5I2BA 1VEZA 1ICJA 4E9AA 5CVKA 2EW6A 4WXLA 1SV2A 5JF1A 4JE6A 5CXJA 4JE8A 4AZ4A 3SW8P 2W3TA 3U7KA 5JF0A 1ZY1A 1LRUA 1Y6HA 1Q1YA 3PN6A 3G6NA 3CPMA 2OS3A 1G2AA 2OS0A 4E9BA 1ZY0A 3OCAA 3QU1A 1V3YA 5CP0A 2KMNA 5JEZA 3M6QA 2AI7A 5E5DA 1BS5A 1BS7A 3M6PA 2OKLA 4EOXP 1BS6A 1BS4A 5CY7A 3PN4A 1BSJA
chains in the Genus database with same CATH topology
2AI9A 3O3JA 1LM4A 3M6RA 3U7MA 3FWXA 3PN2A 5CPDA 5T8ZA 3PN5A 4NT8A 5CX0A 1XEMA 1RQCA 3G5PA 1DEFA 1ZXZA 5JF5A 2EW5A 5JF4A 5JF7A 2AIAA 4DR9A 1JYMA 5JF2A 2DEFA 5KOBA 3E3UA 4AL2A 1VEVA 1SZZA 2W3UA 1LQWA 3UWAA 2AIEP 4DR8A 5CVPA 1WS1A 1LM6A 1RL4A 3K6LA 3G5KA 1IX1A 2EW7A 1G27A 3STRP 2OS1A 5J46A 5JEYA 3U7LA 4AL3A 3UWBA 2AI8A 5JF6A 5CY8A 3SVJP 3PN3A 1S17A 1LMHA 3M6OA 1XEOA 1XENA 3CMDA 1VEYA 5CWXA 1LQYA 5HGWA 1LRYA 1DFFA 4WXKA 1BSKA 3U7NA 1BS8A 1BSZA 4JE7A 5JF8A 1LMEA 5JEXA 5CVQA 3L87A 3U04A 5JF3A 1N5NA 5CWYA 1WS0A 5I2BA 1VEZA 1ICJA 4E9AA 5CVKA 2EW6A 4WXLA 1SV2A 5JF1A 4JE6A 5CXJA 4JE8A 4AZ4A 3SW8P 2W3TA 3U7KA 5JF0A 1ZY1A 1LRUA 1Y6HA 1Q1YA 3PN6A 3G6NA 3CPMA 2OS3A 1G2AA 2OS0A 4E9BA 1ZY0A 3OCAA 3QU1A 1V3YA 5CP0A 2KMNA 5JEZA 3M6QA 2AI7A 5E5DA 1BS5A 1BS7A 3M6PA 2OKLA 4EOXP 1BS6A 1BS4A 5CY7A 3PN4A 1BSJA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2AI9 A;  3O3J A;  1LM4 A;  3M6R A;  3U7M A;  3FWX A;  3PN2 A;  5CPD A;  5T8Z A;  3PN5 A;  4NT8 A;  5CX0 A;  1XEM A;  1RQC A;  3G5P A;  1DEF A;  1ZXZ A;  5JF5 A;  2EW5 A;  5JF4 A;  5JF7 A;  2AIA A;  4DR9 A;  1JYM A;  5JF2 A;  2DEF A;  5KOB A;  3E3U A;  4AL2 A;  1VEV A;  1SZZ A;  2W3U A;  1LQW A;  3UWA A;  2AIE P;  4DR8 A;  5CVP A;  1WS1 A;  1LM6 A;  1RL4 A;  3K6L A;  3G5K A;  1IX1 A;  2EW7 A;  1G27 A;  3STR P;  2OS1 A;  5J46 A;  5JEY A;  3U7L A;  4AL3 A;  3UWB A;  2AI8 A;  5JF6 A;  5CY8 A;  3SVJ P;  3PN3 A;  1S17 A;  1LMH A;  3M6O A;  1XEO A;  1XEN A;  3CMD A;  1VEY A;  5CWX A;  1LQY A;  5HGW A;  1LRY A;  1DFF A;  4WXK A;  1BSK A;  3U7N A;  1BS8 A;  1BSZ A;  4JE7 A;  5JF8 A;  1LME A;  5JEX A;  5CVQ A;  3L87 A;  3U04 A;  5JF3 A;  1N5N A;  5CWY A;  1WS0 A;  5I2B A;  1VEZ A;  1ICJ A;  4E9A A;  5CVK A;  2EW6 A;  4WXL A;  1SV2 A;  5JF1 A;  4JE6 A;  5CXJ A;  4JE8 A;  4AZ4 A;  3SW8 P;  2W3T A;  3U7K A;  5JF0 A;  1ZY1 A;  1LRU A;  1Y6H A;  1Q1Y A;  3PN6 A;  3G6N A;  3CPM A;  2OS3 A;  1G2A A;  2OS0 A;  4E9B A;  1ZY0 A;  3OCA A;  3QU1 A;  1V3Y A;  5CP0 A;  2KMN A;  5JEZ A;  3M6Q A;  2AI7 A;  5E5D A;  1BS5 A;  1BS7 A;  3M6P A;  2OKL A;  4EOX P;  1BS6 A;  1BS4 A;  5CY7 A;  3PN4 A;  1BSJ A; 
#chains in the Genus database with same CATH topology
 2AI9 A;  3O3J A;  1LM4 A;  3M6R A;  3U7M A;  3FWX A;  3PN2 A;  5CPD A;  5T8Z A;  3PN5 A;  4NT8 A;  5CX0 A;  1XEM A;  1RQC A;  3G5P A;  1DEF A;  1ZXZ A;  5JF5 A;  2EW5 A;  5JF4 A;  5JF7 A;  2AIA A;  4DR9 A;  1JYM A;  5JF2 A;  2DEF A;  5KOB A;  3E3U A;  4AL2 A;  1VEV A;  1SZZ A;  2W3U A;  1LQW A;  3UWA A;  2AIE P;  4DR8 A;  5CVP A;  1WS1 A;  1LM6 A;  1RL4 A;  3K6L A;  3G5K A;  1IX1 A;  2EW7 A;  1G27 A;  3STR P;  2OS1 A;  5J46 A;  5JEY A;  3U7L A;  4AL3 A;  3UWB A;  2AI8 A;  5JF6 A;  5CY8 A;  3SVJ P;  3PN3 A;  1S17 A;  1LMH A;  3M6O A;  1XEO A;  1XEN A;  3CMD A;  1VEY A;  5CWX A;  1LQY A;  5HGW A;  1LRY A;  1DFF A;  4WXK A;  1BSK A;  3U7N A;  1BS8 A;  1BSZ A;  4JE7 A;  5JF8 A;  1LME A;  5JEX A;  5CVQ A;  3L87 A;  3U04 A;  5JF3 A;  1N5N A;  5CWY A;  1WS0 A;  5I2B A;  1VEZ A;  1ICJ A;  4E9A A;  5CVK A;  2EW6 A;  4WXL A;  1SV2 A;  5JF1 A;  4JE6 A;  5CXJ A;  4JE8 A;  4AZ4 A;  3SW8 P;  2W3T A;  3U7K A;  5JF0 A;  1ZY1 A;  1LRU A;  1Y6H A;  1Q1Y A;  3PN6 A;  3G6N A;  3CPM A;  2OS3 A;  1G2A A;  2OS0 A;  4E9B A;  1ZY0 A;  3OCA A;  3QU1 A;  1V3Y A;  5CP0 A;  2KMN A;  5JEZ A;  3M6Q A;  2AI7 A;  5E5D A;  1BS5 A;  1BS7 A;  3M6P A;  2OKL A;  4EOX P;  1BS6 A;  1BS4 A;  5CY7 A;  3PN4 A;  1BSJ A; 
#chains in the Genus database with same CATH homology
 2AI9 A;  3O3J A;  1LM4 A;  3M6R A;  3U7M A;  3FWX A;  3PN2 A;  5CPD A;  5T8Z A;  3PN5 A;  4NT8 A;  5CX0 A;  1XEM A;  1RQC A;  3G5P A;  1DEF A;  1ZXZ A;  5JF5 A;  2EW5 A;  5JF4 A;  5JF7 A;  2AIA A;  4DR9 A;  1JYM A;  5JF2 A;  2DEF A;  5KOB A;  3E3U A;  4AL2 A;  1VEV A;  1SZZ A;  2W3U A;  1LQW A;  3UWA A;  2AIE P;  4DR8 A;  5CVP A;  1WS1 A;  1LM6 A;  1RL4 A;  3K6L A;  3G5K A;  1IX1 A;  2EW7 A;  1G27 A;  3STR P;  2OS1 A;  5J46 A;  5JEY A;  3U7L A;  4AL3 A;  3UWB A;  2AI8 A;  5JF6 A;  5CY8 A;  3SVJ P;  3PN3 A;  1S17 A;  1LMH A;  3M6O A;  1XEO A;  1XEN A;  3CMD A;  1VEY A;  5CWX A;  1LQY A;  5HGW A;  1LRY A;  1DFF A;  4WXK A;  1BSK A;  3U7N A;  1BS8 A;  1BSZ A;  4JE7 A;  5JF8 A;  1LME A;  5JEX A;  5CVQ A;  3L87 A;  3U04 A;  5JF3 A;  1N5N A;  5CWY A;  1WS0 A;  5I2B A;  1VEZ A;  1ICJ A;  4E9A A;  5CVK A;  2EW6 A;  4WXL A;  1SV2 A;  5JF1 A;  4JE6 A;  5CXJ A;  4JE8 A;  4AZ4 A;  3SW8 P;  2W3T A;  3U7K A;  5JF0 A;  1ZY1 A;  1LRU A;  1Y6H A;  1Q1Y A;  3PN6 A;  3G6N A;  3CPM A;  2OS3 A;  1G2A A;  2OS0 A;  4E9B A;  1ZY0 A;  3OCA A;  3QU1 A;  1V3Y A;  5CP0 A;  2KMN A;  5JEZ A;  3M6Q A;  2AI7 A;  5E5D A;  1BS5 A;  1BS7 A;  3M6P A;  2OKL A;  4EOX P;  1BS6 A;  1BS4 A;  5CY7 A;  3PN4 A;  1BSJ A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...