2AIEP

S.pneumoniae polypeptide deformylase complexed with sb-505684
Total Genus 59
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
59
sequence length
202
structure length
194
Chain Sequence
SAIERIVKAAHLIDMCDIIREGNPSLRTVAEEVTFPLSDQEIILGEKMMQFLKHSQDPVMAEKMGLRGGVGLAAPQLDISKRIIAVLVPNIEAYDLEAIMYNPKIVSHSVQDAALGEGEGCLSVDRNVPGYVVRHARVTVDYFDKDGEKHRIKLKGYNSIVVQHEIDHINGIMFYDRINEKDPFAVKDGLLILE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords Peptide deformylase
publication title Structural Variation and inhibitor binding in polypeptide deformylase from four different bacterial species
pubmed doi rcsb
source organism Streptococcus pneumoniae
total genus 59
structure length 194
sequence length 202
ec nomenclature ec 3.5.1.88: Peptide deformylase.
pdb deposition date 2005-07-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
P PF01327 Pep_deformylase Polypeptide deformylase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.45.10 Alpha Beta Alpha-Beta Complex Peptide Deformylase Peptide deformylase 2aieP00
1BS4A 1SV2A 3FWXA 3PN6A 5I2BA 4JE7A 1JYMA 5CXJA 5JF0A 3M6RA 2OS3A 3U7MA 1G27A 4WXKA 1N5NA 3E3UA 3G5KA 1DEFA 5CVQA 4NT8A 3SVJP 1LRUA 1ICJA 5CY8A 3U7KA 5JF7A 2EW6A 1WS1A 3OCAA 1LM6A 5CX0A 1BSKA 3PN4A 3M6QA 4AL3A 1V3YA 1ZY1A 2EW5A 5CY7A 3M6OA 1XEOA 5E5DA 3CPMA 1LQYA 3PN3A 1LRYA 5JF3A 3CMDA 2AIEP 1RL4A 3STRP 5HGWA 5T8ZA 2W3UA 2OS0A 1LMEA 5JF8A 1LM4A 1IX1A 3PN5A 4E9AA 3O3JA 5JF5A 1S17A 5CVKA 3SW8P 5CVPA 1SZZA 3G6NA 4DR8A 4AZ4A 1BS6A 2AI8A 5CWXA 1ZXZA 3K6LA 3L87A 3U7NA 1BS7A 2OS1A 1LMHA 4JE8A 5CP0A 1WS0A 1BSZA 5JF4A 3UWAA 1Y6HA 4AL2A 1ZY0A 5JEYA 5JF2A 4JE6A 1BS5A 1Q1YA 2AIAA 3G5PA 5CPDA 4EOXP 1G2AA 5KOBA 1XENA 1RQCA 1VEZA 1BS8A 5JF1A 4WXLA 3M6PA 5JF6A 1VEYA 3UWBA 1LQWA 5CWYA 1XEMA 1VEVA 3QU1A 4E9BA 2W3TA 5JEZA 2EW7A 1DFFA 2AI9A 2OKLA 5JEXA 5J46A 4DR9A 3PN2A 3U7LA 2AI7A 1BSJA 3U04A 2KMNA 2DEFA
chains in the Genus database with same CATH superfamily
1BS4A 1SV2A 3FWXA 3PN6A 5I2BA 4JE7A 1JYMA 5CXJA 5JF0A 3M6RA 2OS3A 3U7MA 1G27A 4WXKA 1N5NA 3E3UA 3G5KA 1DEFA 5CVQA 4NT8A 3SVJP 1LRUA 1ICJA 5CY8A 3U7KA 5JF7A 2EW6A 1WS1A 3OCAA 1LM6A 5CX0A 1BSKA 3PN4A 3M6QA 4AL3A 1V3YA 1ZY1A 2EW5A 5CY7A 3M6OA 1XEOA 5E5DA 3CPMA 1LQYA 3PN3A 1LRYA 5JF3A 3CMDA 2AIEP 1RL4A 3STRP 5HGWA 5T8ZA 2W3UA 2OS0A 1LMEA 5JF8A 1LM4A 1IX1A 3PN5A 4E9AA 3O3JA 5JF5A 1S17A 5CVKA 3SW8P 5CVPA 1SZZA 3G6NA 4DR8A 4AZ4A 1BS6A 2AI8A 5CWXA 1ZXZA 3K6LA 3L87A 3U7NA 1BS7A 2OS1A 1LMHA 4JE8A 5CP0A 1WS0A 1BSZA 5JF4A 3UWAA 1Y6HA 4AL2A 1ZY0A 5JEYA 5JF2A 4JE6A 1BS5A 1Q1YA 2AIAA 3G5PA 5CPDA 4EOXP 1G2AA 5KOBA 1XENA 1RQCA 1VEZA 1BS8A 5JF1A 4WXLA 3M6PA 5JF6A 1VEYA 3UWBA 1LQWA 5CWYA 1XEMA 1VEVA 3QU1A 4E9BA 2W3TA 5JEZA 2EW7A 1DFFA 2AI9A 2OKLA 5JEXA 5J46A 4DR9A 3PN2A 3U7LA 2AI7A 1BSJA 3U04A 2KMNA 2DEFA
chains in the Genus database with same CATH topology
1BS4A 1SV2A 3FWXA 3PN6A 5I2BA 4JE7A 1JYMA 5CXJA 5JF0A 3M6RA 2OS3A 3U7MA 1G27A 4WXKA 1N5NA 3E3UA 3G5KA 1DEFA 5CVQA 4NT8A 3SVJP 1LRUA 1ICJA 5CY8A 3U7KA 5JF7A 2EW6A 1WS1A 3OCAA 1LM6A 5CX0A 1BSKA 3PN4A 3M6QA 4AL3A 1V3YA 1ZY1A 2EW5A 5CY7A 3M6OA 1XEOA 5E5DA 3CPMA 1LQYA 3PN3A 1LRYA 5JF3A 3CMDA 2AIEP 1RL4A 3STRP 5HGWA 5T8ZA 2W3UA 2OS0A 1LMEA 5JF8A 1LM4A 1IX1A 3PN5A 4E9AA 3O3JA 5JF5A 1S17A 5CVKA 3SW8P 5CVPA 1SZZA 3G6NA 4DR8A 4AZ4A 1BS6A 2AI8A 5CWXA 1ZXZA 3K6LA 3L87A 3U7NA 1BS7A 2OS1A 1LMHA 4JE8A 5CP0A 1WS0A 1BSZA 5JF4A 3UWAA 1Y6HA 4AL2A 1ZY0A 5JEYA 5JF2A 4JE6A 1BS5A 1Q1YA 2AIAA 3G5PA 5CPDA 4EOXP 1G2AA 5KOBA 1XENA 1RQCA 1VEZA 1BS8A 5JF1A 4WXLA 3M6PA 5JF6A 1VEYA 3UWBA 1LQWA 5CWYA 1XEMA 1VEVA 3QU1A 4E9BA 2W3TA 5JEZA 2EW7A 1DFFA 2AI9A 2OKLA 5JEXA 5J46A 4DR9A 3PN2A 3U7LA 2AI7A 1BSJA 3U04A 2KMNA 2DEFA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1BS4 A;  1SV2 A;  3FWX A;  3PN6 A;  5I2B A;  4JE7 A;  1JYM A;  5CXJ A;  5JF0 A;  3M6R A;  2OS3 A;  3U7M A;  1G27 A;  4WXK A;  1N5N A;  3E3U A;  3G5K A;  1DEF A;  5CVQ A;  4NT8 A;  3SVJ P;  1LRU A;  1ICJ A;  5CY8 A;  3U7K A;  5JF7 A;  2EW6 A;  1WS1 A;  3OCA A;  1LM6 A;  5CX0 A;  1BSK A;  3PN4 A;  3M6Q A;  4AL3 A;  1V3Y A;  1ZY1 A;  2EW5 A;  5CY7 A;  3M6O A;  1XEO A;  5E5D A;  3CPM A;  1LQY A;  3PN3 A;  1LRY A;  5JF3 A;  3CMD A;  2AIE P;  1RL4 A;  3STR P;  5HGW A;  5T8Z A;  2W3U A;  2OS0 A;  1LME A;  5JF8 A;  1LM4 A;  1IX1 A;  3PN5 A;  4E9A A;  3O3J A;  5JF5 A;  1S17 A;  5CVK A;  3SW8 P;  5CVP A;  1SZZ A;  3G6N A;  4DR8 A;  4AZ4 A;  1BS6 A;  2AI8 A;  5CWX A;  1ZXZ A;  3K6L A;  3L87 A;  3U7N A;  1BS7 A;  2OS1 A;  1LMH A;  4JE8 A;  5CP0 A;  1WS0 A;  1BSZ A;  5JF4 A;  3UWA A;  1Y6H A;  4AL2 A;  1ZY0 A;  5JEY A;  5JF2 A;  4JE6 A;  1BS5 A;  1Q1Y A;  2AIA A;  3G5P A;  5CPD A;  4EOX P;  1G2A A;  5KOB A;  1XEN A;  1RQC A;  1VEZ A;  1BS8 A;  5JF1 A;  4WXL A;  3M6P A;  5JF6 A;  1VEY A;  3UWB A;  1LQW A;  5CWY A;  1XEM A;  1VEV A;  3QU1 A;  4E9B A;  2W3T A;  5JEZ A;  2EW7 A;  1DFF A;  2AI9 A;  2OKL A;  5JEX A;  5J46 A;  4DR9 A;  3PN2 A;  3U7L A;  2AI7 A;  1BSJ A;  3U04 A;  2KMN A;  2DEF A; 
#chains in the Genus database with same CATH topology
 1BS4 A;  1SV2 A;  3FWX A;  3PN6 A;  5I2B A;  4JE7 A;  1JYM A;  5CXJ A;  5JF0 A;  3M6R A;  2OS3 A;  3U7M A;  1G27 A;  4WXK A;  1N5N A;  3E3U A;  3G5K A;  1DEF A;  5CVQ A;  4NT8 A;  3SVJ P;  1LRU A;  1ICJ A;  5CY8 A;  3U7K A;  5JF7 A;  2EW6 A;  1WS1 A;  3OCA A;  1LM6 A;  5CX0 A;  1BSK A;  3PN4 A;  3M6Q A;  4AL3 A;  1V3Y A;  1ZY1 A;  2EW5 A;  5CY7 A;  3M6O A;  1XEO A;  5E5D A;  3CPM A;  1LQY A;  3PN3 A;  1LRY A;  5JF3 A;  3CMD A;  2AIE P;  1RL4 A;  3STR P;  5HGW A;  5T8Z A;  2W3U A;  2OS0 A;  1LME A;  5JF8 A;  1LM4 A;  1IX1 A;  3PN5 A;  4E9A A;  3O3J A;  5JF5 A;  1S17 A;  5CVK A;  3SW8 P;  5CVP A;  1SZZ A;  3G6N A;  4DR8 A;  4AZ4 A;  1BS6 A;  2AI8 A;  5CWX A;  1ZXZ A;  3K6L A;  3L87 A;  3U7N A;  1BS7 A;  2OS1 A;  1LMH A;  4JE8 A;  5CP0 A;  1WS0 A;  1BSZ A;  5JF4 A;  3UWA A;  1Y6H A;  4AL2 A;  1ZY0 A;  5JEY A;  5JF2 A;  4JE6 A;  1BS5 A;  1Q1Y A;  2AIA A;  3G5P A;  5CPD A;  4EOX P;  1G2A A;  5KOB A;  1XEN A;  1RQC A;  1VEZ A;  1BS8 A;  5JF1 A;  4WXL A;  3M6P A;  5JF6 A;  1VEY A;  3UWB A;  1LQW A;  5CWY A;  1XEM A;  1VEV A;  3QU1 A;  4E9B A;  2W3T A;  5JEZ A;  2EW7 A;  1DFF A;  2AI9 A;  2OKL A;  5JEX A;  5J46 A;  4DR9 A;  3PN2 A;  3U7L A;  2AI7 A;  1BSJ A;  3U04 A;  2KMN A;  2DEF A; 
#chains in the Genus database with same CATH homology
 1BS4 A;  1SV2 A;  3FWX A;  3PN6 A;  5I2B A;  4JE7 A;  1JYM A;  5CXJ A;  5JF0 A;  3M6R A;  2OS3 A;  3U7M A;  1G27 A;  4WXK A;  1N5N A;  3E3U A;  3G5K A;  1DEF A;  5CVQ A;  4NT8 A;  3SVJ P;  1LRU A;  1ICJ A;  5CY8 A;  3U7K A;  5JF7 A;  2EW6 A;  1WS1 A;  3OCA A;  1LM6 A;  5CX0 A;  1BSK A;  3PN4 A;  3M6Q A;  4AL3 A;  1V3Y A;  1ZY1 A;  2EW5 A;  5CY7 A;  3M6O A;  1XEO A;  5E5D A;  3CPM A;  1LQY A;  3PN3 A;  1LRY A;  5JF3 A;  3CMD A;  2AIE P;  1RL4 A;  3STR P;  5HGW A;  5T8Z A;  2W3U A;  2OS0 A;  1LME A;  5JF8 A;  1LM4 A;  1IX1 A;  3PN5 A;  4E9A A;  3O3J A;  5JF5 A;  1S17 A;  5CVK A;  3SW8 P;  5CVP A;  1SZZ A;  3G6N A;  4DR8 A;  4AZ4 A;  1BS6 A;  2AI8 A;  5CWX A;  1ZXZ A;  3K6L A;  3L87 A;  3U7N A;  1BS7 A;  2OS1 A;  1LMH A;  4JE8 A;  5CP0 A;  1WS0 A;  1BSZ A;  5JF4 A;  3UWA A;  1Y6H A;  4AL2 A;  1ZY0 A;  5JEY A;  5JF2 A;  4JE6 A;  1BS5 A;  1Q1Y A;  2AIA A;  3G5P A;  5CPD A;  4EOX P;  1G2A A;  5KOB A;  1XEN A;  1RQC A;  1VEZ A;  1BS8 A;  5JF1 A;  4WXL A;  3M6P A;  5JF6 A;  1VEY A;  3UWB A;  1LQW A;  5CWY A;  1XEM A;  1VEV A;  3QU1 A;  4E9B A;  2W3T A;  5JEZ A;  2EW7 A;  1DFF A;  2AI9 A;  2OKL A;  5JEX A;  5J46 A;  4DR9 A;  3PN2 A;  3U7L A;  2AI7 A;  1BSJ A;  3U04 A;  2KMN A;  2DEF A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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