5CY7A

Structure of xoo1075, a peptide deformylase from xanthomonas oryze pv oryze, in complex with fragment 275
Total Genus 44
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
44
sequence length
171
structure length
171
Chain Sequence
MIRDIIRMGDKRLLRVAPQVTNLGSAELHALVSDMFETMGAAHGVGLAAPQIAVDLQLMVFGFEASERYPEAPAVPLTALANAQIEPLSDEMENGWEGCLSIPGLRAVIPRYRYIRYRGFAPDGSPIEREAEGFHARVVQHEYDHLVGRLYPSRIENFDTFGFDDVLSYDL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase/hydrolase inhibitor
molecule keywords Peptide deformylase
publication title Structure of Xoo1075, a peptide deformylase from Xanthomonas oryze pv oryze, in complex with fragment 275
rcsb
source organism Xanthomonas oryzae pv. oryzae kacc10331
total genus 44
structure length 171
sequence length 171
ec nomenclature ec 3.5.1.88: Peptide deformylase.
pdb deposition date 2015-07-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01327 Pep_deformylase Polypeptide deformylase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.45.10 Alpha Beta Alpha-Beta Complex Peptide Deformylase Peptide deformylase 5cy7A00
1N5NA 5KOBA 1ZY0A 4WXKA 1G2AA 5HGWA 2OS0A 2EW6A 3G5KA 4JE8A 3UWAA 5JF8A 1Q1YA 3U7LA 1LM4A 1XENA 2DEFA 3K6LA 5CVPA 1WS1A 3FWXA 1V3YA 1LRYA 1BS8A 2EW5A 3U7MA 4JE6A 4EOXP 5JF2A 1LM6A 4JE7A 3QU1A 5CVQA 3SVJP 5JF6A 5CP0A 1XEMA 2AIAA 4NT8A 1IX1A 1RL4A 1BS5A 2KMNA 1JYMA 3M6RA 5E5DA 1Y6HA 4DR9A 4WXLA 2EW7A 4E9BA 3O3JA 3OCAA 5JF3A 5CVKA 3CPMA 2AIEP 2W3UA 3PN3A 2OS1A 3U04A 5CPDA 1LQWA 1LQYA 1BSJA 3E3UA 3M6PA 3G5PA 1S17A 1VEYA 1BS4A 1BSZA 4DR8A 5JF4A 2OKLA 3PN2A 3STRP 1VEVA 3M6OA 5CY7A 5J46A 3CMDA 3PN4A 2OS3A 1LRUA 5JF0A 5JEXA 2AI9A 5CX0A 1VEZA 5CXJA 2W3TA 1BS6A 2AI8A 1BS7A 1DFFA 1ZY1A 1RQCA 5CWYA 4AL3A 3UWBA 1ICJA 3U7KA 5JEZA 3M6QA 1SZZA 5CWXA 1BSKA 3G6NA 5JF7A 5I2BA 5JEYA 3L87A 1G27A 1WS0A 4AZ4A 1XEOA 5T8ZA 4AL2A 3SW8P 3U7NA 5JF1A 3PN5A 5JF5A 1LMHA 4E9AA 3PN6A 2AI7A 1ZXZA 1SV2A 5CY8A 1DEFA 1LMEA
chains in the Genus database with same CATH superfamily
1N5NA 5KOBA 1ZY0A 4WXKA 1G2AA 5HGWA 2OS0A 2EW6A 3G5KA 4JE8A 3UWAA 5JF8A 1Q1YA 3U7LA 1LM4A 1XENA 2DEFA 3K6LA 5CVPA 1WS1A 3FWXA 1V3YA 1LRYA 1BS8A 2EW5A 3U7MA 4JE6A 4EOXP 5JF2A 1LM6A 4JE7A 3QU1A 5CVQA 3SVJP 5JF6A 5CP0A 1XEMA 2AIAA 4NT8A 1IX1A 1RL4A 1BS5A 2KMNA 1JYMA 3M6RA 5E5DA 1Y6HA 4DR9A 4WXLA 2EW7A 4E9BA 3O3JA 3OCAA 5JF3A 5CVKA 3CPMA 2AIEP 2W3UA 3PN3A 2OS1A 3U04A 5CPDA 1LQWA 1LQYA 1BSJA 3E3UA 3M6PA 3G5PA 1S17A 1VEYA 1BS4A 1BSZA 4DR8A 5JF4A 2OKLA 3PN2A 3STRP 1VEVA 3M6OA 5CY7A 5J46A 3CMDA 3PN4A 2OS3A 1LRUA 5JF0A 5JEXA 2AI9A 5CX0A 1VEZA 5CXJA 2W3TA 1BS6A 2AI8A 1BS7A 1DFFA 1ZY1A 1RQCA 5CWYA 4AL3A 3UWBA 1ICJA 3U7KA 5JEZA 3M6QA 1SZZA 5CWXA 1BSKA 3G6NA 5JF7A 5I2BA 5JEYA 3L87A 1G27A 1WS0A 4AZ4A 1XEOA 5T8ZA 4AL2A 3SW8P 3U7NA 5JF1A 3PN5A 5JF5A 1LMHA 4E9AA 3PN6A 2AI7A 1ZXZA 1SV2A 5CY8A 1DEFA 1LMEA
chains in the Genus database with same CATH topology
1N5NA 5KOBA 1ZY0A 4WXKA 1G2AA 5HGWA 2OS0A 2EW6A 3G5KA 4JE8A 3UWAA 5JF8A 1Q1YA 3U7LA 1LM4A 1XENA 2DEFA 3K6LA 5CVPA 1WS1A 3FWXA 1V3YA 1LRYA 1BS8A 2EW5A 3U7MA 4JE6A 4EOXP 5JF2A 1LM6A 4JE7A 3QU1A 5CVQA 3SVJP 5JF6A 5CP0A 1XEMA 2AIAA 4NT8A 1IX1A 1RL4A 1BS5A 2KMNA 1JYMA 3M6RA 5E5DA 1Y6HA 4DR9A 4WXLA 2EW7A 4E9BA 3O3JA 3OCAA 5JF3A 5CVKA 3CPMA 2AIEP 2W3UA 3PN3A 2OS1A 3U04A 5CPDA 1LQWA 1LQYA 1BSJA 3E3UA 3M6PA 3G5PA 1S17A 1VEYA 1BS4A 1BSZA 4DR8A 5JF4A 2OKLA 3PN2A 3STRP 1VEVA 3M6OA 5CY7A 5J46A 3CMDA 3PN4A 2OS3A 1LRUA 5JF0A 5JEXA 2AI9A 5CX0A 1VEZA 5CXJA 2W3TA 1BS6A 2AI8A 1BS7A 1DFFA 1ZY1A 1RQCA 5CWYA 4AL3A 3UWBA 1ICJA 3U7KA 5JEZA 3M6QA 1SZZA 5CWXA 1BSKA 3G6NA 5JF7A 5I2BA 5JEYA 3L87A 1G27A 1WS0A 4AZ4A 1XEOA 5T8ZA 4AL2A 3SW8P 3U7NA 5JF1A 3PN5A 5JF5A 1LMHA 4E9AA 3PN6A 2AI7A 1ZXZA 1SV2A 5CY8A 1DEFA 1LMEA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1N5N A;  5KOB A;  1ZY0 A;  4WXK A;  1G2A A;  5HGW A;  2OS0 A;  2EW6 A;  3G5K A;  4JE8 A;  3UWA A;  5JF8 A;  1Q1Y A;  3U7L A;  1LM4 A;  1XEN A;  2DEF A;  3K6L A;  5CVP A;  1WS1 A;  3FWX A;  1V3Y A;  1LRY A;  1BS8 A;  2EW5 A;  3U7M A;  4JE6 A;  4EOX P;  5JF2 A;  1LM6 A;  4JE7 A;  3QU1 A;  5CVQ A;  3SVJ P;  5JF6 A;  5CP0 A;  1XEM A;  2AIA A;  4NT8 A;  1IX1 A;  1RL4 A;  1BS5 A;  2KMN A;  1JYM A;  3M6R A;  5E5D A;  1Y6H A;  4DR9 A;  4WXL A;  2EW7 A;  4E9B A;  3O3J A;  3OCA A;  5JF3 A;  5CVK A;  3CPM A;  2AIE P;  2W3U A;  3PN3 A;  2OS1 A;  3U04 A;  5CPD A;  1LQW A;  1LQY A;  1BSJ A;  3E3U A;  3M6P A;  3G5P A;  1S17 A;  1VEY A;  1BS4 A;  1BSZ A;  4DR8 A;  5JF4 A;  2OKL A;  3PN2 A;  3STR P;  1VEV A;  3M6O A;  5CY7 A;  5J46 A;  3CMD A;  3PN4 A;  2OS3 A;  1LRU A;  5JF0 A;  5JEX A;  2AI9 A;  5CX0 A;  1VEZ A;  5CXJ A;  2W3T A;  1BS6 A;  2AI8 A;  1BS7 A;  1DFF A;  1ZY1 A;  1RQC A;  5CWY A;  4AL3 A;  3UWB A;  1ICJ A;  3U7K A;  5JEZ A;  3M6Q A;  1SZZ A;  5CWX A;  1BSK A;  3G6N A;  5JF7 A;  5I2B A;  5JEY A;  3L87 A;  1G27 A;  1WS0 A;  4AZ4 A;  1XEO A;  5T8Z A;  4AL2 A;  3SW8 P;  3U7N A;  5JF1 A;  3PN5 A;  5JF5 A;  1LMH A;  4E9A A;  3PN6 A;  2AI7 A;  1ZXZ A;  1SV2 A;  5CY8 A;  1DEF A;  1LME A; 
#chains in the Genus database with same CATH topology
 1N5N A;  5KOB A;  1ZY0 A;  4WXK A;  1G2A A;  5HGW A;  2OS0 A;  2EW6 A;  3G5K A;  4JE8 A;  3UWA A;  5JF8 A;  1Q1Y A;  3U7L A;  1LM4 A;  1XEN A;  2DEF A;  3K6L A;  5CVP A;  1WS1 A;  3FWX A;  1V3Y A;  1LRY A;  1BS8 A;  2EW5 A;  3U7M A;  4JE6 A;  4EOX P;  5JF2 A;  1LM6 A;  4JE7 A;  3QU1 A;  5CVQ A;  3SVJ P;  5JF6 A;  5CP0 A;  1XEM A;  2AIA A;  4NT8 A;  1IX1 A;  1RL4 A;  1BS5 A;  2KMN A;  1JYM A;  3M6R A;  5E5D A;  1Y6H A;  4DR9 A;  4WXL A;  2EW7 A;  4E9B A;  3O3J A;  3OCA A;  5JF3 A;  5CVK A;  3CPM A;  2AIE P;  2W3U A;  3PN3 A;  2OS1 A;  3U04 A;  5CPD A;  1LQW A;  1LQY A;  1BSJ A;  3E3U A;  3M6P A;  3G5P A;  1S17 A;  1VEY A;  1BS4 A;  1BSZ A;  4DR8 A;  5JF4 A;  2OKL A;  3PN2 A;  3STR P;  1VEV A;  3M6O A;  5CY7 A;  5J46 A;  3CMD A;  3PN4 A;  2OS3 A;  1LRU A;  5JF0 A;  5JEX A;  2AI9 A;  5CX0 A;  1VEZ A;  5CXJ A;  2W3T A;  1BS6 A;  2AI8 A;  1BS7 A;  1DFF A;  1ZY1 A;  1RQC A;  5CWY A;  4AL3 A;  3UWB A;  1ICJ A;  3U7K A;  5JEZ A;  3M6Q A;  1SZZ A;  5CWX A;  1BSK A;  3G6N A;  5JF7 A;  5I2B A;  5JEY A;  3L87 A;  1G27 A;  1WS0 A;  4AZ4 A;  1XEO A;  5T8Z A;  4AL2 A;  3SW8 P;  3U7N A;  5JF1 A;  3PN5 A;  5JF5 A;  1LMH A;  4E9A A;  3PN6 A;  2AI7 A;  1ZXZ A;  1SV2 A;  5CY8 A;  1DEF A;  1LME A; 
#chains in the Genus database with same CATH homology
 1N5N A;  5KOB A;  1ZY0 A;  4WXK A;  1G2A A;  5HGW A;  2OS0 A;  2EW6 A;  3G5K A;  4JE8 A;  3UWA A;  5JF8 A;  1Q1Y A;  3U7L A;  1LM4 A;  1XEN A;  2DEF A;  3K6L A;  5CVP A;  1WS1 A;  3FWX A;  1V3Y A;  1LRY A;  1BS8 A;  2EW5 A;  3U7M A;  4JE6 A;  4EOX P;  5JF2 A;  1LM6 A;  4JE7 A;  3QU1 A;  5CVQ A;  3SVJ P;  5JF6 A;  5CP0 A;  1XEM A;  2AIA A;  4NT8 A;  1IX1 A;  1RL4 A;  1BS5 A;  2KMN A;  1JYM A;  3M6R A;  5E5D A;  1Y6H A;  4DR9 A;  4WXL A;  2EW7 A;  4E9B A;  3O3J A;  3OCA A;  5JF3 A;  5CVK A;  3CPM A;  2AIE P;  2W3U A;  3PN3 A;  2OS1 A;  3U04 A;  5CPD A;  1LQW A;  1LQY A;  1BSJ A;  3E3U A;  3M6P A;  3G5P A;  1S17 A;  1VEY A;  1BS4 A;  1BSZ A;  4DR8 A;  5JF4 A;  2OKL A;  3PN2 A;  3STR P;  1VEV A;  3M6O A;  5CY7 A;  5J46 A;  3CMD A;  3PN4 A;  2OS3 A;  1LRU A;  5JF0 A;  5JEX A;  2AI9 A;  5CX0 A;  1VEZ A;  5CXJ A;  2W3T A;  1BS6 A;  2AI8 A;  1BS7 A;  1DFF A;  1ZY1 A;  1RQC A;  5CWY A;  4AL3 A;  3UWB A;  1ICJ A;  3U7K A;  5JEZ A;  3M6Q A;  1SZZ A;  5CWX A;  1BSK A;  3G6N A;  5JF7 A;  5I2B A;  5JEY A;  3L87 A;  1G27 A;  1WS0 A;  4AZ4 A;  1XEO A;  5T8Z A;  4AL2 A;  3SW8 P;  3U7N A;  5JF1 A;  3PN5 A;  5JF5 A;  1LMH A;  4E9A A;  3PN6 A;  2AI7 A;  1ZXZ A;  1SV2 A;  5CY8 A;  1DEF A;  1LME A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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