1VQOE

The structure of ccpmn bound to the large ribosomal subunit haloarcula marismortui
Total Genus 38
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
38
sequence length
172
structure length
172
Chain Sequence
PRVELEIPEDVDAEQDHLDITVEGDNGSVTRRLWYPDIDVSVDGDTVVIESDEDNAKTMSTIGTFQSHIENMFHGVTEGWEYGMEVFYSHFPMQVNVEGDEVVIENFLGEKAPRRTTIHGDTDVEIDGEELTVSGPDIEAVGQTAADIEQLTRINDKDVRVFQDGVYITRKP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ribosome
molecule keywords 23S ribosomal rna
publication title Structural Insights into the Roles of Water and the 2' Hydroxyl of the P Site tRNA in the Peptidyl Transferase Reaction.
pubmed doi rcsb
total genus 38
structure length 172
sequence length 172
ec nomenclature
pdb deposition date 2004-12-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
E PF00347 Ribosomal_L6 Ribosomal protein L6
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.930.12 Alpha Beta Alpha-Beta Complex Outer Surface Protein A; domain 3 Ribosomal protein L6, alpha-beta domain 1vqoE02
3.90.930.12 Alpha Beta Alpha-Beta Complex Outer Surface Protein A; domain 3 Ribosomal protein L6, alpha-beta domain 1vqoE01
3OW2E 3CCEE 1VQLE 5H1SI 5JVHE 1K73G 1Q81G 1VQPE 1Q86G 3CMAE 1KC8G 1VQ6E 1VQKE 1VQNE 1KD1G 5GAEG 5GAGG 1YJWE 3CCVE 1K9MG 1YIJE 1NJIG 4WF9E 3CPWE 5AN9B 3CD6E 1YHQE 4IO9E 1YI2E 3G71E 3CCUE 3DLLE 2QA4E 5DM6E 2ZJPE 3CCSE 4U67E 3I56E 5JVGE 1VQ4E 3I55E 2OTLE 3CC4E 1KQSE 1VQ5E 2ZJRE 1K8AG 2CQLA 3J7ZG 1YITE 5DM7E 1YJ9E 4WFNE 3CCLE 1RL6A 4IOAE 3CC7E 3CMEE 5GADG 1JJ2E 3CC2E 1QVGE 5MLCH 3G6EE 1VQOE 1Q82G 2ZJQE 4WFAE 1VQ9E 1VQME 4UY8G 3PIOE 1N8RG 1Q7YG 5HL7E 1VQ8E 1QVFE 3PIPE 3CF5E 1VQ7E 1M1KG 1S72E 1M90G 3CCME 4WFBE 5GAHG 1W2BE 3CXCE 3CCRE 3CCJE 3CCQE 4IOCE 1YJNE 2OTJE 4WCEE 3G4SE 2QEXE
chains in the Genus database with same CATH superfamily
5B3MO 1P4PA 3OW2E 2OL8O 3CKFA 3CCEE 1VQLE 5H1SI 5JVHE 1K73G 1Q81G 2OL7A 2G8CO 1VQPE 2FKGA 1Q86G 3CMAE 2OY1O 1KC8G 1VQ6E 1VQKE 1VQNE 1KD1G 3AUMO 5GAEG 5GAGG 3IGEA 2AF5A 1YJWE 3CCVE 1K9MG 1YIJE 2OY5O 1NJIG 4WF9E 3CPWE 5AN9B 3CD6E 1YHQE 2I5VO 1RJLC 4IO9E 3G71E 1YI2E 3CCUE 5B10O 3DLLE 2QA4E 5DM6E 2ZJPE 3CCSE 4U67E 3I56E 2PI3O 5JVGE 1VQ4E 3I55E 2OTLE 3CC4E 1KQSE 1VQ5E 2I5ZO 2ZJRE 3IG9A 1K8AG 2CQLA 3J7ZG 1YITE 5DM7E 2OL6O 1FJ1E 1YJ9E 4WFNE 2OY7A 3CCLE 1RL6A 4IOAE 3CC7E 3CMEE 5GADG 1JJ2E 1OSPO 3CC2E 1QVGE 2HKDA 5MLCH 3G6EE 3EC5A 1VQOE 1Q82G 2FKJA 4WFAE 1VQ9E 2ZJQE 1VQME 4UY8G 3PIOE 1N8RG 1Q7YG 5HL7E 1VQ8E 1QVFE 3PIPE 3CF5E 2OY8A 1VQ7E 1M1KG 5B11O 1S72E 1M90G 3CCME 4WFBE 5GAHG 1W2BE 3CXCE 2OYBO 3CKGA 3CCRE 3CCJE 3CCQE 4IOCE 1YJNE 2OTJE 5B2AO 4WCEE 3G4SE 2QEXE
chains in the Genus database with same CATH topology
3OW2E 3CCEE 1VQLE 5H1SI 5JVHE 1K73G 1Q81G 1VQPE 1Q86G 3CMAE 1KC8G 1VQ6E 1VQKE 1VQNE 1KD1G 5GAEG 5GAGG 1YJWE 3CCVE 1K9MG 1YIJE 1NJIG 4WF9E 3CPWE 5AN9B 3CD6E 1YHQE 4IO9E 1YI2E 3G71E 3CCUE 3DLLE 2QA4E 5DM6E 2ZJPE 3CCSE 4U67E 3I56E 5JVGE 1VQ4E 3I55E 2OTLE 3CC4E 1KQSE 1VQ5E 2ZJRE 1K8AG 2CQLA 3J7ZG 1YITE 5DM7E 1YJ9E 4WFNE 3CCLE 1RL6A 4IOAE 3CC7E 3CMEE 5GADG 1JJ2E 3CC2E 1QVGE 5MLCH 3G6EE 1VQOE 1Q82G 2ZJQE 4WFAE 1VQ9E 1VQME 4UY8G 3PIOE 1N8RG 1Q7YG 5HL7E 1VQ8E 1QVFE 3PIPE 3CF5E 1VQ7E 1M1KG 1S72E 1M90G 3CCME 4WFBE 5GAHG 1W2BE 3CXCE 3CCRE 3CCJE 3CCQE 4IOCE 1YJNE 2OTJE 4WCEE 3G4SE 2QEXE
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3OW2 E;  3CCE E;  1VQL E;  5H1S I;  5JVH E;  1K73 G;  1Q81 G;  1VQP E;  1Q86 G;  3CMA E;  1KC8 G;  1VQ6 E;  1VQK E;  1VQN E;  1KD1 G;  5GAE G;  5GAG G;  1YJW E;  3CCV E;  1K9M G;  1YIJ E;  1NJI G;  4WF9 E;  3CPW E;  5AN9 B;  3CD6 E;  1YHQ E;  4IO9 E;  1YI2 E;  3G71 E;  3CCU E;  3DLL E;  2QA4 E;  5DM6 E;  2ZJP E;  3CCS E;  4U67 E;  3I56 E;  5JVG E;  1VQ4 E;  3I55 E;  2OTL E;  3CC4 E;  1KQS E;  1VQ5 E;  2ZJR E;  1K8A G;  2CQL A;  3J7Z G;  1YIT E;  5DM7 E;  1YJ9 E;  4WFN E;  3CCL E;  1RL6 A;  4IOA E;  3CC7 E;  3CME E;  5GAD G;  1JJ2 E;  3CC2 E;  1QVG E;  5MLC H;  3G6E E;  1VQO E;  1Q82 G;  2ZJQ E;  4WFA E;  1VQ9 E;  1VQM E;  4UY8 G;  3PIO E;  1N8R G;  1Q7Y G;  5HL7 E;  1VQ8 E;  1QVF E;  3PIP E;  3CF5 E;  1VQ7 E;  1M1K G;  1S72 E;  1M90 G;  3CCM E;  4WFB E;  5GAH G;  1W2B E;  3CXC E;  3CCR E;  3CCJ E;  3CCQ E;  4IOC E;  1YJN E;  2OTJ E;  4WCE E;  3G4S E;  2QEX E; 
#chains in the Genus database with same CATH topology
 5B3M O;  1P4P A;  3OW2 E;  2OL8 O;  3CKF A;  3CCE E;  1VQL E;  5H1S I;  5JVH E;  1K73 G;  1Q81 G;  2OL7 A;  2G8C O;  1VQP E;  2FKG A;  1Q86 G;  3CMA E;  2OY1 O;  1KC8 G;  1VQ6 E;  1VQK E;  1VQN E;  1KD1 G;  3AUM O;  5GAE G;  5GAG G;  3IGE A;  2AF5 A;  1YJW E;  3CCV E;  1K9M G;  1YIJ E;  2OY5 O;  1NJI G;  4WF9 E;  3CPW E;  5AN9 B;  3CD6 E;  1YHQ E;  2I5V O;  1RJL C;  4IO9 E;  3G71 E;  1YI2 E;  3CCU E;  5B10 O;  3DLL E;  2QA4 E;  5DM6 E;  2ZJP E;  3CCS E;  4U67 E;  3I56 E;  2PI3 O;  5JVG E;  1VQ4 E;  3I55 E;  2OTL E;  3CC4 E;  1KQS E;  1VQ5 E;  2I5Z O;  2ZJR E;  3IG9 A;  1K8A G;  2CQL A;  3J7Z G;  1YIT E;  5DM7 E;  2OL6 O;  1FJ1 E;  1YJ9 E;  4WFN E;  2OY7 A;  3CCL E;  1RL6 A;  4IOA E;  3CC7 E;  3CME E;  5GAD G;  1JJ2 E;  1OSP O;  3CC2 E;  1QVG E;  2HKD A;  5MLC H;  3G6E E;  3EC5 A;  1VQO E;  1Q82 G;  2FKJ A;  4WFA E;  1VQ9 E;  2ZJQ E;  1VQM E;  4UY8 G;  3PIO E;  1N8R G;  1Q7Y G;  5HL7 E;  1VQ8 E;  1QVF E;  3PIP E;  3CF5 E;  2OY8 A;  1VQ7 E;  1M1K G;  5B11 O;  1S72 E;  1M90 G;  3CCM E;  4WFB E;  5GAH G;  1W2B E;  3CXC E;  2OYB O;  3CKG A;  3CCR E;  3CCJ E;  3CCQ E;  4IOC E;  1YJN E;  2OTJ E;  5B2A O;  4WCE E;  3G4S E;  2QEX E; 
#chains in the Genus database with same CATH homology
 3OW2 E;  3CCE E;  1VQL E;  5H1S I;  5JVH E;  1K73 G;  1Q81 G;  1VQP E;  1Q86 G;  3CMA E;  1KC8 G;  1VQ6 E;  1VQK E;  1VQN E;  1KD1 G;  5GAE G;  5GAG G;  1YJW E;  3CCV E;  1K9M G;  1YIJ E;  1NJI G;  4WF9 E;  3CPW E;  5AN9 B;  3CD6 E;  1YHQ E;  4IO9 E;  1YI2 E;  3G71 E;  3CCU E;  3DLL E;  2QA4 E;  5DM6 E;  2ZJP E;  3CCS E;  4U67 E;  3I56 E;  5JVG E;  1VQ4 E;  3I55 E;  2OTL E;  3CC4 E;  1KQS E;  1VQ5 E;  2ZJR E;  1K8A G;  2CQL A;  3J7Z G;  1YIT E;  5DM7 E;  1YJ9 E;  4WFN E;  3CCL E;  1RL6 A;  4IOA E;  3CC7 E;  3CME E;  5GAD G;  1JJ2 E;  3CC2 E;  1QVG E;  5MLC H;  3G6E E;  1VQO E;  1Q82 G;  2ZJQ E;  4WFA E;  1VQ9 E;  1VQM E;  4UY8 G;  3PIO E;  1N8R G;  1Q7Y G;  5HL7 E;  1VQ8 E;  1QVF E;  3PIP E;  3CF5 E;  1VQ7 E;  1M1K G;  1S72 E;  1M90 G;  3CCM E;  4WFB E;  5GAH G;  1W2B E;  3CXC E;  3CCR E;  3CCJ E;  3CCQ E;  4IOC E;  1YJN E;  2OTJ E;  4WCE E;  3G4S E;  2QEX E; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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