2OTJE

13-deoxytedanolide bound to the large subunit of haloarcula marismortui
Total Genus 39
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
39
sequence length
172
structure length
172
Chain Sequence
PRVELEIPEDVDAEQDHLDITVEGDNGSVTRRLWYPDIDVSVDGDTVVIESDEDNAKTMSTIGTFQSHIENMFHGVTEGWEYGMEVFYSHFPMQVNVEGDEVVIENFLGEKAPRRTTIHGDTDVEIDGEELTVSGPDIEAVGQTAADIEQLTRINDKDVRVFQDGVYITRKP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ribosome
molecule keywords 23S ribosomal RNA
publication title The Structures of Antibiotics Bound to the E Site Region of the 50 S Ribosomal Subunit of Haloarcula marismortui: 13-Deoxytedanolide and Girodazole.
pubmed doi rcsb
total genus 39
structure length 172
sequence length 172
ec nomenclature
pdb deposition date 2007-02-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
E PF00347 Ribosomal_L6 Ribosomal protein L6
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.930.12 Alpha Beta Alpha-Beta Complex Outer Surface Protein A; domain 3 Ribosomal protein L6, alpha-beta domain 2otjE02
3.90.930.12 Alpha Beta Alpha-Beta Complex Outer Surface Protein A; domain 3 Ribosomal protein L6, alpha-beta domain 2otjE01
1VQLE 4WF9E 5HL7E 5MLCH 3CCLE 3CCRE 1YHQE 3CCEE 3G71E 1KD1G 1VQ7E 1M90G 3CCME 1Q7YG 5GAEG 3G6EE 1K9MG 5DM6E 4WCEE 5GAHG 2OTJE 1M1KG 1VQOE 1YITE 3I55E 1JJ2E 1YJNE 3DLLE 3OW2E 5GADG 1N8RG 3PIOE 5H1SI 3CXCE 1VQ5E 3PIPE 1K73G 1NJIG 3CD6E 1K8AG 3CC7E 4IOAE 3CC2E 1QVFE 1Q82G 2ZJQE 4IO9E 5JVHE 5GAGG 1VQKE 5JVGE 2QEXE 1W2BE 1VQ8E 1VQNE 4UY8G 3I56E 2ZJRE 2ZJPE 3CCSE 1YJWE 1QVGE 4U67E 3CCQE 1VQ6E 3CCUE 4WFAE 4WFNE 1YJ9E 1YI2E 1Q86G 5AN9B 3CCVE 2CQLA 4IOCE 2OTLE 3CMEE 1VQME 1S72E 3J7ZG 3CMAE 1VQ9E 4WFBE 3CPWE 3CF5E 1RL6A 3CCJE 3CC4E 1YIJE 1VQ4E 3G4SE 1Q81G 1VQPE 1KQSE 5DM7E 2QA4E 1KC8G
chains in the Genus database with same CATH superfamily
1VQLE 3AUMO 2HKDA 3EC5A 4WF9E 5HL7E 5MLCH 3CCLE 2G8CO 3CCRE 1YHQE 3CCEE 3G71E 2OYBO 5B3MO 1KD1G 2FKGA 3CKGA 3IG9A 1VQ7E 1RJLC 1M90G 3CCME 1Q7YG 5GAEG 3G6EE 2OL6O 1P4PA 1K9MG 5DM6E 4WCEE 5GAHG 2OTJE 1M1KG 2OL8O 1VQOE 1YITE 3I55E 1JJ2E 1YJNE 3DLLE 3OW2E 5GADG 1N8RG 2FKJA 3PIOE 1FJ1E 5H1SI 2OY5O 3CXCE 1VQ5E 2OY7A 3PIPE 2OY8A 1K73G 1NJIG 3CD6E 1K8AG 3CC7E 4IOAE 3CC2E 2I5VO 1QVFE 1Q82G 2ZJQE 4IO9E 5JVHE 5GAGG 1VQKE 5JVGE 2QEXE 1W2BE 1VQ8E 1VQNE 4UY8G 3I56E 2ZJRE 2ZJPE 3CCSE 1YJWE 1QVGE 4U67E 3CCQE 1VQ6E 3CCUE 4WFAE 2I5ZO 4WFNE 1YJ9E 1YI2E 1Q86G 5AN9B 3CCVE 2CQLA 4IOCE 2OTLE 3CMEE 1VQME 2PI3O 1S72E 5B2AO 3J7ZG 3CMAE 1VQ9E 4WFBE 5B10O 3CPWE 3CF5E 1RL6A 3IGEA 3CCJE 3CC4E 1YIJE 1VQ4E 3G4SE 2OL7A 1Q81G 1VQPE 3CKFA 1KQSE 2OY1O 5DM7E 2QA4E 1KC8G 5B11O 1OSPO 2AF5A
chains in the Genus database with same CATH topology
1VQLE 4WF9E 5HL7E 5MLCH 3CCLE 3CCRE 1YHQE 3CCEE 3G71E 1KD1G 1VQ7E 1M90G 3CCME 1Q7YG 5GAEG 3G6EE 1K9MG 5DM6E 4WCEE 5GAHG 2OTJE 1M1KG 1VQOE 1YITE 3I55E 1JJ2E 1YJNE 3DLLE 3OW2E 5GADG 1N8RG 3PIOE 5H1SI 3CXCE 1VQ5E 3PIPE 1K73G 1NJIG 3CD6E 1K8AG 3CC7E 4IOAE 3CC2E 1QVFE 1Q82G 2ZJQE 4IO9E 5JVHE 5GAGG 1VQKE 5JVGE 2QEXE 1W2BE 1VQ8E 1VQNE 4UY8G 3I56E 2ZJRE 2ZJPE 3CCSE 1YJWE 1QVGE 4U67E 3CCQE 1VQ6E 3CCUE 4WFAE 4WFNE 1YJ9E 1YI2E 1Q86G 5AN9B 3CCVE 2CQLA 4IOCE 2OTLE 3CMEE 1VQME 1S72E 3J7ZG 3CMAE 1VQ9E 4WFBE 3CPWE 3CF5E 1RL6A 3CCJE 3CC4E 1YIJE 1VQ4E 3G4SE 1Q81G 1VQPE 1KQSE 5DM7E 2QA4E 1KC8G
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1VQL E;  4WF9 E;  5HL7 E;  5MLC H;  3CCL E;  3CCR E;  1YHQ E;  3CCE E;  3G71 E;  1KD1 G;  1VQ7 E;  1M90 G;  3CCM E;  1Q7Y G;  5GAE G;  3G6E E;  1K9M G;  5DM6 E;  4WCE E;  5GAH G;  2OTJ E;  1M1K G;  1VQO E;  1YIT E;  3I55 E;  1JJ2 E;  1YJN E;  3DLL E;  3OW2 E;  5GAD G;  1N8R G;  3PIO E;  5H1S I;  3CXC E;  1VQ5 E;  3PIP E;  1K73 G;  1NJI G;  3CD6 E;  1K8A G;  3CC7 E;  4IOA E;  3CC2 E;  1QVF E;  1Q82 G;  2ZJQ E;  4IO9 E;  5JVH E;  5GAG G;  1VQK E;  5JVG E;  2QEX E;  1W2B E;  1VQ8 E;  1VQN E;  4UY8 G;  3I56 E;  2ZJR E;  2ZJP E;  3CCS E;  1YJW E;  1QVG E;  4U67 E;  3CCQ E;  1VQ6 E;  3CCU E;  4WFA E;  4WFN E;  1YJ9 E;  1YI2 E;  1Q86 G;  5AN9 B;  3CCV E;  2CQL A;  4IOC E;  2OTL E;  3CME E;  1VQM E;  1S72 E;  3J7Z G;  3CMA E;  1VQ9 E;  4WFB E;  3CPW E;  3CF5 E;  1RL6 A;  3CCJ E;  3CC4 E;  1YIJ E;  1VQ4 E;  3G4S E;  1Q81 G;  1VQP E;  1KQS E;  5DM7 E;  2QA4 E;  1KC8 G; 
#chains in the Genus database with same CATH topology
 1VQL E;  3AUM O;  2HKD A;  3EC5 A;  4WF9 E;  5HL7 E;  5MLC H;  3CCL E;  2G8C O;  3CCR E;  1YHQ E;  3CCE E;  3G71 E;  2OYB O;  5B3M O;  1KD1 G;  2FKG A;  3CKG A;  3IG9 A;  1VQ7 E;  1RJL C;  1M90 G;  3CCM E;  1Q7Y G;  5GAE G;  3G6E E;  2OL6 O;  1P4P A;  1K9M G;  5DM6 E;  4WCE E;  5GAH G;  2OTJ E;  1M1K G;  2OL8 O;  1VQO E;  1YIT E;  3I55 E;  1JJ2 E;  1YJN E;  3DLL E;  3OW2 E;  5GAD G;  1N8R G;  2FKJ A;  3PIO E;  1FJ1 E;  5H1S I;  2OY5 O;  3CXC E;  1VQ5 E;  2OY7 A;  3PIP E;  2OY8 A;  1K73 G;  1NJI G;  3CD6 E;  1K8A G;  3CC7 E;  4IOA E;  3CC2 E;  2I5V O;  1QVF E;  1Q82 G;  2ZJQ E;  4IO9 E;  5JVH E;  5GAG G;  1VQK E;  5JVG E;  2QEX E;  1W2B E;  1VQ8 E;  1VQN E;  4UY8 G;  3I56 E;  2ZJR E;  2ZJP E;  3CCS E;  1YJW E;  1QVG E;  4U67 E;  3CCQ E;  1VQ6 E;  3CCU E;  4WFA E;  2I5Z O;  4WFN E;  1YJ9 E;  1YI2 E;  1Q86 G;  5AN9 B;  3CCV E;  2CQL A;  4IOC E;  2OTL E;  3CME E;  1VQM E;  2PI3 O;  1S72 E;  5B2A O;  3J7Z G;  3CMA E;  1VQ9 E;  4WFB E;  5B10 O;  3CPW E;  3CF5 E;  1RL6 A;  3IGE A;  3CCJ E;  3CC4 E;  1YIJ E;  1VQ4 E;  3G4S E;  2OL7 A;  1Q81 G;  1VQP E;  3CKF A;  1KQS E;  2OY1 O;  5DM7 E;  2QA4 E;  1KC8 G;  5B11 O;  1OSP O;  2AF5 A; 
#chains in the Genus database with same CATH homology
 1VQL E;  4WF9 E;  5HL7 E;  5MLC H;  3CCL E;  3CCR E;  1YHQ E;  3CCE E;  3G71 E;  1KD1 G;  1VQ7 E;  1M90 G;  3CCM E;  1Q7Y G;  5GAE G;  3G6E E;  1K9M G;  5DM6 E;  4WCE E;  5GAH G;  2OTJ E;  1M1K G;  1VQO E;  1YIT E;  3I55 E;  1JJ2 E;  1YJN E;  3DLL E;  3OW2 E;  5GAD G;  1N8R G;  3PIO E;  5H1S I;  3CXC E;  1VQ5 E;  3PIP E;  1K73 G;  1NJI G;  3CD6 E;  1K8A G;  3CC7 E;  4IOA E;  3CC2 E;  1QVF E;  1Q82 G;  2ZJQ E;  4IO9 E;  5JVH E;  5GAG G;  1VQK E;  5JVG E;  2QEX E;  1W2B E;  1VQ8 E;  1VQN E;  4UY8 G;  3I56 E;  2ZJR E;  2ZJP E;  3CCS E;  1YJW E;  1QVG E;  4U67 E;  3CCQ E;  1VQ6 E;  3CCU E;  4WFA E;  4WFN E;  1YJ9 E;  1YI2 E;  1Q86 G;  5AN9 B;  3CCV E;  2CQL A;  4IOC E;  2OTL E;  3CME E;  1VQM E;  1S72 E;  3J7Z G;  3CMA E;  1VQ9 E;  4WFB E;  3CPW E;  3CF5 E;  1RL6 A;  3CCJ E;  3CC4 E;  1YIJ E;  1VQ4 E;  3G4S E;  1Q81 G;  1VQP E;  1KQS E;  5DM7 E;  2QA4 E;  1KC8 G; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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