4WFAE

The crystal structure of the large ribosomal subunit of staphylococcus aureus in complex with linezolid
Total Genus 21
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
21
sequence length
157
structure length
157
Chain Sequence
VTFDGNHVTVKGPKGELSRTLNERMTFKQEENTIEVVRPSDSKEDRTNHGTTRALLNNMVQGVSQGYVKVLELVGVGYRAQMQGKDLILNVGYSHPVEIKAEENITFSVEKNTVVKVEGISKEQVGALASNIRSVRPPEPYKGKGIRYQGEYVRRKE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ribosome
molecule keywords 23S rRNA
publication title Structural insights into species-specific features of the ribosome from the pathogen Staphylococcus aureus.
pubmed doi rcsb
total genus 21
structure length 157
sequence length 157
ec nomenclature
pdb deposition date 2014-09-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
E PF00347 Ribosomal_L6 Ribosomal protein L6
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.930.12 Alpha Beta Alpha-Beta Complex Outer Surface Protein A; domain 3 Ribosomal protein L6, alpha-beta domain 4wfaE02
3.90.930.12 Alpha Beta Alpha-Beta Complex Outer Surface Protein A; domain 3 Ribosomal protein L6, alpha-beta domain 4wfaE01
3CC2E 3CCLE 1VQ6E 2ZJQE 3CCUE 1QVFE 5DM6E 3G71E 5DM7E 5MLCH 5GAGG 3CC4E 1VQKE 4WFAE 4IO9E 2OTJE 1M90G 3CCRE 3CCVE 1VQNE 3CCSE 3CCQE 5JVHE 1VQ9E 4IOCE 3CF5E 1VQ8E 1QVGE 3G6EE 1K73G 1VQ7E 3CPWE 4WCEE 1Q81G 1KC8G 2CQLA 1VQPE 1VQOE 1N8RG 1S72E 3CC7E 3OW2E 2QA4E 5GAHG 1Q82G 3CD6E 1YJ9E 2ZJPE 4IOAE 2ZJRE 1K8AG 4UY8G 1YITE 1YJWE 1JJ2E 2OTLE 5AN9B 3G4SE 1KD1G 5GAEG 5GADG 1VQME 3PIOE 1Q86G 4WF9E 1YIJE 3CCJE 1VQLE 3CCME 1Q7YG 3CXCE 1M1KG 1W2BE 2QEXE 4U67E 3DLLE 1KQSE 1YHQE 4WFBE 3CMEE 1YJNE 1NJIG 3CCEE 1K9MG 3PIPE 5H1SI 3CMAE 1YI2E 3I56E 3I55E 1VQ4E 5JVGE 4WFNE 5HL7E 1RL6A 3J7ZG 1VQ5E
chains in the Genus database with same CATH superfamily
3CC2E 3CCLE 1VQ6E 2ZJQE 3CCUE 1QVFE 5DM6E 3G71E 5DM7E 5MLCH 5GAGG 3CC4E 1VQKE 4WFAE 4IO9E 2OYBO 1M90G 2OTJE 3CCRE 3CCVE 1RJLC 3CCSE 3CCQE 5JVHE 1VQNE 5B2AO 1P4PA 1VQ9E 4IOCE 5B10O 3CF5E 3CKGA 1VQ8E 2OY8A 1QVGE 3G6EE 1K73G 1VQ7E 3CPWE 4WCEE 1Q81G 1KC8G 2CQLA 1VQPE 2OL6O 2AF5A 2PI3O 1VQOE 2OY5O 1N8RG 2OY1O 2OL8O 1S72E 3CKFA 2HKDA 3CC7E 3OW2E 2QA4E 5GAHG 1Q82G 3CD6E 2OL7A 1FJ1E 1YJ9E 1OSPO 2ZJPE 4IOAE 2ZJRE 1K8AG 4UY8G 1YITE 1YJWE 1JJ2E 2OTLE 5AN9B 5B11O 3G4SE 1KD1G 5GAEG 5GADG 1VQME 3IGEA 3PIOE 1Q86G 4WF9E 1YIJE 3CCJE 1VQLE 3CCME 1Q7YG 3CXCE 1M1KG 1W2BE 2G8CO 2FKGA 2QEXE 2I5ZO 4U67E 3DLLE 1KQSE 1YHQE 2I5VO 2FKJA 4WFBE 3AUMO 3CMEE 1YJNE 1NJIG 3EC5A 3CCEE 1K9MG 3PIPE 5H1SI 3CMAE 3IG9A 1YI2E 3I56E 3I55E 1VQ4E 5JVGE 5B3MO 4WFNE 5HL7E 1RL6A 3J7ZG 2OY7A 1VQ5E
chains in the Genus database with same CATH topology
3CC2E 3CCLE 1VQ6E 2ZJQE 3CCUE 1QVFE 5DM6E 3G71E 5DM7E 5MLCH 5GAGG 3CC4E 1VQKE 4WFAE 4IO9E 2OTJE 1M90G 3CCRE 3CCVE 1VQNE 3CCSE 3CCQE 5JVHE 1VQ9E 4IOCE 3CF5E 1VQ8E 1QVGE 3G6EE 1K73G 1VQ7E 3CPWE 4WCEE 1Q81G 1KC8G 2CQLA 1VQPE 1VQOE 1N8RG 1S72E 3CC7E 3OW2E 2QA4E 5GAHG 1Q82G 3CD6E 1YJ9E 2ZJPE 4IOAE 2ZJRE 1K8AG 4UY8G 1YITE 1YJWE 1JJ2E 2OTLE 5AN9B 3G4SE 1KD1G 5GAEG 5GADG 1VQME 3PIOE 1Q86G 4WF9E 1YIJE 3CCJE 1VQLE 3CCME 1Q7YG 3CXCE 1M1KG 1W2BE 2QEXE 4U67E 3DLLE 1KQSE 1YHQE 4WFBE 3CMEE 1YJNE 1NJIG 3CCEE 1K9MG 3PIPE 5H1SI 3CMAE 1YI2E 3I56E 3I55E 1VQ4E 5JVGE 4WFNE 5HL7E 1RL6A 3J7ZG 1VQ5E
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3CC2 E;  3CCL E;  1VQ6 E;  2ZJQ E;  3CCU E;  1QVF E;  5DM6 E;  3G71 E;  5DM7 E;  5MLC H;  5GAG G;  3CC4 E;  1VQK E;  4WFA E;  4IO9 E;  2OTJ E;  1M90 G;  3CCR E;  3CCV E;  1VQN E;  3CCS E;  3CCQ E;  5JVH E;  1VQ9 E;  4IOC E;  3CF5 E;  1VQ8 E;  1QVG E;  3G6E E;  1K73 G;  1VQ7 E;  3CPW E;  4WCE E;  1Q81 G;  1KC8 G;  2CQL A;  1VQP E;  1VQO E;  1N8R G;  1S72 E;  3CC7 E;  3OW2 E;  2QA4 E;  5GAH G;  1Q82 G;  3CD6 E;  1YJ9 E;  2ZJP E;  4IOA E;  2ZJR E;  1K8A G;  4UY8 G;  1YIT E;  1YJW E;  1JJ2 E;  2OTL E;  5AN9 B;  3G4S E;  1KD1 G;  5GAE G;  5GAD G;  1VQM E;  3PIO E;  1Q86 G;  4WF9 E;  1YIJ E;  3CCJ E;  1VQL E;  3CCM E;  1Q7Y G;  3CXC E;  1M1K G;  1W2B E;  2QEX E;  4U67 E;  3DLL E;  1KQS E;  1YHQ E;  4WFB E;  3CME E;  1YJN E;  1NJI G;  3CCE E;  1K9M G;  3PIP E;  5H1S I;  3CMA E;  1YI2 E;  3I56 E;  3I55 E;  1VQ4 E;  5JVG E;  4WFN E;  5HL7 E;  1RL6 A;  3J7Z G;  1VQ5 E; 
#chains in the Genus database with same CATH topology
 3CC2 E;  3CCL E;  1VQ6 E;  2ZJQ E;  3CCU E;  1QVF E;  5DM6 E;  3G71 E;  5DM7 E;  5MLC H;  5GAG G;  3CC4 E;  1VQK E;  4WFA E;  4IO9 E;  2OYB O;  1M90 G;  2OTJ E;  3CCR E;  3CCV E;  1RJL C;  3CCS E;  3CCQ E;  5JVH E;  1VQN E;  5B2A O;  1P4P A;  1VQ9 E;  4IOC E;  5B10 O;  3CF5 E;  3CKG A;  1VQ8 E;  2OY8 A;  1QVG E;  3G6E E;  1K73 G;  1VQ7 E;  3CPW E;  4WCE E;  1Q81 G;  1KC8 G;  2CQL A;  1VQP E;  2OL6 O;  2AF5 A;  2PI3 O;  1VQO E;  2OY5 O;  1N8R G;  2OY1 O;  2OL8 O;  1S72 E;  3CKF A;  2HKD A;  3CC7 E;  3OW2 E;  2QA4 E;  5GAH G;  1Q82 G;  3CD6 E;  2OL7 A;  1FJ1 E;  1YJ9 E;  1OSP O;  2ZJP E;  4IOA E;  2ZJR E;  1K8A G;  4UY8 G;  1YIT E;  1YJW E;  1JJ2 E;  2OTL E;  5AN9 B;  5B11 O;  3G4S E;  1KD1 G;  5GAE G;  5GAD G;  1VQM E;  3IGE A;  3PIO E;  1Q86 G;  4WF9 E;  1YIJ E;  3CCJ E;  1VQL E;  3CCM E;  1Q7Y G;  3CXC E;  1M1K G;  1W2B E;  2G8C O;  2FKG A;  2QEX E;  2I5Z O;  4U67 E;  3DLL E;  1KQS E;  1YHQ E;  2I5V O;  2FKJ A;  4WFB E;  3AUM O;  3CME E;  1YJN E;  1NJI G;  3EC5 A;  3CCE E;  1K9M G;  3PIP E;  5H1S I;  3CMA E;  3IG9 A;  1YI2 E;  3I56 E;  3I55 E;  1VQ4 E;  5JVG E;  5B3M O;  4WFN E;  5HL7 E;  1RL6 A;  3J7Z G;  2OY7 A;  1VQ5 E; 
#chains in the Genus database with same CATH homology
 3CC2 E;  3CCL E;  1VQ6 E;  2ZJQ E;  3CCU E;  1QVF E;  5DM6 E;  3G71 E;  5DM7 E;  5MLC H;  5GAG G;  3CC4 E;  1VQK E;  4WFA E;  4IO9 E;  2OTJ E;  1M90 G;  3CCR E;  3CCV E;  1VQN E;  3CCS E;  3CCQ E;  5JVH E;  1VQ9 E;  4IOC E;  3CF5 E;  1VQ8 E;  1QVG E;  3G6E E;  1K73 G;  1VQ7 E;  3CPW E;  4WCE E;  1Q81 G;  1KC8 G;  2CQL A;  1VQP E;  1VQO E;  1N8R G;  1S72 E;  3CC7 E;  3OW2 E;  2QA4 E;  5GAH G;  1Q82 G;  3CD6 E;  1YJ9 E;  2ZJP E;  4IOA E;  2ZJR E;  1K8A G;  4UY8 G;  1YIT E;  1YJW E;  1JJ2 E;  2OTL E;  5AN9 B;  3G4S E;  1KD1 G;  5GAE G;  5GAD G;  1VQM E;  3PIO E;  1Q86 G;  4WF9 E;  1YIJ E;  3CCJ E;  1VQL E;  3CCM E;  1Q7Y G;  3CXC E;  1M1K G;  1W2B E;  2QEX E;  4U67 E;  3DLL E;  1KQS E;  1YHQ E;  4WFB E;  3CME E;  1YJN E;  1NJI G;  3CCE E;  1K9M G;  3PIP E;  5H1S I;  3CMA E;  1YI2 E;  3I56 E;  3I55 E;  1VQ4 E;  5JVG E;  4WFN E;  5HL7 E;  1RL6 A;  3J7Z G;  1VQ5 E; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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