3CMAE

The structure of cca and cca-phe-cap-bio bound to the large ribosomal subunit of haloarcula marismortui
Total Genus 38
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
38
sequence length
172
structure length
172
Chain Sequence
PRVELEIPEDVDAEQDHLDITVEGDNGSVTRRLWYPDIDVSVDGDTVVIESDEDNAKTMSTIGTFQSHIENMFHGVTEGWEYGMEVFYSHFPMQVNVEGDEVVIENFLGEKAPRRTTIHGDTDVEIDGEELTVSGPDIEAVGQTAADIEQLTRINDKDVRVFQDGVYITRKP
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Ribosome
molecule keywords 50S ribosomal protein L2P
publication title Peptidyl-CCA deacylation on the ribosome promoted by induced fit and the O3'-hydroxyl group of A76 of the unacylated A-site tRNA.
pubmed doi rcsb
total genus 38
structure length 172
sequence length 172
ec nomenclature
pdb deposition date 2008-03-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
E PF00347 Ribosomal_L6 Ribosomal protein L6
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.930.12 Alpha Beta Alpha-Beta Complex Outer Surface Protein A; domain 3 Ribosomal protein L6, alpha-beta domain 3cmaE02
3.90.930.12 Alpha Beta Alpha-Beta Complex Outer Surface Protein A; domain 3 Ribosomal protein L6, alpha-beta domain 3cmaE01
1YI2E 5GAEG 1VQME 5JVHE 2CQLA 3CCLE 5AN9B 1K73G 1NJIG 1N8RG 1VQ7E 3CC4E 1VQ4E 4IOCE 1Q82G 5GAGG 2QEXE 3CMAE 3CCEE 1YITE 3CCVE 2OTLE 1Q81G 1VQ5E 3CMEE 1Q7YG 5GAHG 1YHQE 4WF9E 1VQ8E 1M1KG 5H1SI 3CCRE 5MLCH 3CCME 3CCQE 3CCUE 3CF5E 5JVGE 5HL7E 1YJWE 1QVGE 1YJNE 3DLLE 4UY8G 5DM7E 1M90G 1Q86G 3G6EE 1K8AG 1VQKE 3CCSE 4U67E 2ZJQE 1KQSE 3I55E 2QA4E 1VQPE 2ZJRE 3CCJE 4WFBE 1VQLE 3CXCE 5GADG 4WFAE 4IOAE 1VQ6E 3OW2E 3G4SE 1KD1G 4WFNE 1JJ2E 2OTJE 3J7ZG 1VQNE 1RL6A 3CPWE 3CD6E 2ZJPE 1KC8G 1QVFE 4IO9E 1VQ9E 1YJ9E 1S72E 4WCEE 3PIOE 3CC2E 3CC7E 3I56E 3PIPE 3G71E 1K9MG 1W2BE 1VQOE 5DM6E 1YIJE
chains in the Genus database with same CATH superfamily
1YI2E 5GAEG 1VQME 5JVHE 2OY1O 5B11O 2CQLA 3CCLE 5AN9B 1K73G 1NJIG 3CKGA 1N8RG 1VQ7E 3CC4E 1VQ4E 4IOCE 1Q82G 5GAGG 2QEXE 3CMAE 3CCEE 1YITE 3CCVE 2OL8O 2OTLE 1P4PA 1Q81G 1VQ5E 3CMEE 1Q7YG 5GAHG 1YHQE 4WF9E 1VQ8E 1M1KG 5H1SI 3CCRE 5MLCH 3CCME 3CCQE 3CCUE 3CF5E 5JVGE 5HL7E 1YJWE 1QVGE 1YJNE 2OL7A 3DLLE 2FKJA 2AF5A 4UY8G 5DM7E 1OSPO 1M90G 1Q86G 3G6EE 1K8AG 1VQKE 3CCSE 4U67E 2ZJQE 2HKDA 1KQSE 3I55E 2QA4E 3IG9A 1VQPE 2OL6O 1RJLC 2ZJRE 3CCJE 4WFBE 2OY7A 1VQLE 2I5ZO 3CXCE 5GADG 4WFAE 4IOAE 1VQ6E 3OW2E 3G4SE 1KD1G 4WFNE 2OY8A 3AUMO 3EC5A 1JJ2E 2OTJE 3J7ZG 1VQNE 5B3MO 2OY5O 1RL6A 3CPWE 3CD6E 2ZJPE 2FKGA 5B2AO 2OYBO 3IGEA 1KC8G 1QVFE 4IO9E 1VQ9E 1YJ9E 4WCEE 1S72E 3PIOE 3CC2E 3CKFA 3CC7E 3I56E 1FJ1E 2I5VO 5B10O 3PIPE 3G71E 1K9MG 1W2BE 1VQOE 2PI3O 5DM6E 2G8CO 1YIJE
chains in the Genus database with same CATH topology
1YI2E 5GAEG 1VQME 5JVHE 2CQLA 3CCLE 5AN9B 1K73G 1NJIG 1N8RG 1VQ7E 3CC4E 1VQ4E 4IOCE 1Q82G 5GAGG 2QEXE 3CMAE 3CCEE 1YITE 3CCVE 2OTLE 1Q81G 1VQ5E 3CMEE 1Q7YG 5GAHG 1YHQE 4WF9E 1VQ8E 1M1KG 5H1SI 3CCRE 5MLCH 3CCME 3CCQE 3CCUE 3CF5E 5JVGE 5HL7E 1YJWE 1QVGE 1YJNE 3DLLE 4UY8G 5DM7E 1M90G 1Q86G 3G6EE 1K8AG 1VQKE 3CCSE 4U67E 2ZJQE 1KQSE 3I55E 2QA4E 1VQPE 2ZJRE 3CCJE 4WFBE 1VQLE 3CXCE 5GADG 4WFAE 4IOAE 1VQ6E 3OW2E 3G4SE 1KD1G 4WFNE 1JJ2E 2OTJE 3J7ZG 1VQNE 1RL6A 3CPWE 3CD6E 2ZJPE 1KC8G 1QVFE 4IO9E 1VQ9E 1YJ9E 1S72E 4WCEE 3PIOE 3CC2E 3CC7E 3I56E 3PIPE 3G71E 1K9MG 1W2BE 1VQOE 5DM6E 1YIJE
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1YI2 E;  5GAE G;  1VQM E;  5JVH E;  2CQL A;  3CCL E;  5AN9 B;  1K73 G;  1NJI G;  1N8R G;  1VQ7 E;  3CC4 E;  1VQ4 E;  4IOC E;  1Q82 G;  5GAG G;  2QEX E;  3CMA E;  3CCE E;  1YIT E;  3CCV E;  2OTL E;  1Q81 G;  1VQ5 E;  3CME E;  1Q7Y G;  5GAH G;  1YHQ E;  4WF9 E;  1VQ8 E;  1M1K G;  5H1S I;  3CCR E;  5MLC H;  3CCM E;  3CCQ E;  3CCU E;  3CF5 E;  5JVG E;  5HL7 E;  1YJW E;  1QVG E;  1YJN E;  3DLL E;  4UY8 G;  5DM7 E;  1M90 G;  1Q86 G;  3G6E E;  1K8A G;  1VQK E;  3CCS E;  4U67 E;  2ZJQ E;  1KQS E;  3I55 E;  2QA4 E;  1VQP E;  2ZJR E;  3CCJ E;  4WFB E;  1VQL E;  3CXC E;  5GAD G;  4WFA E;  4IOA E;  1VQ6 E;  3OW2 E;  3G4S E;  1KD1 G;  4WFN E;  1JJ2 E;  2OTJ E;  3J7Z G;  1VQN E;  1RL6 A;  3CPW E;  3CD6 E;  2ZJP E;  1KC8 G;  1QVF E;  4IO9 E;  1VQ9 E;  1YJ9 E;  1S72 E;  4WCE E;  3PIO E;  3CC2 E;  3CC7 E;  3I56 E;  3PIP E;  3G71 E;  1K9M G;  1W2B E;  1VQO E;  5DM6 E;  1YIJ E; 
#chains in the Genus database with same CATH topology
 1YI2 E;  5GAE G;  1VQM E;  5JVH E;  2OY1 O;  5B11 O;  2CQL A;  3CCL E;  5AN9 B;  1K73 G;  1NJI G;  3CKG A;  1N8R G;  1VQ7 E;  3CC4 E;  1VQ4 E;  4IOC E;  1Q82 G;  5GAG G;  2QEX E;  3CMA E;  3CCE E;  1YIT E;  3CCV E;  2OL8 O;  2OTL E;  1P4P A;  1Q81 G;  1VQ5 E;  3CME E;  1Q7Y G;  5GAH G;  1YHQ E;  4WF9 E;  1VQ8 E;  1M1K G;  5H1S I;  3CCR E;  5MLC H;  3CCM E;  3CCQ E;  3CCU E;  3CF5 E;  5JVG E;  5HL7 E;  1YJW E;  1QVG E;  1YJN E;  2OL7 A;  3DLL E;  2FKJ A;  2AF5 A;  4UY8 G;  5DM7 E;  1OSP O;  1M90 G;  1Q86 G;  3G6E E;  1K8A G;  1VQK E;  3CCS E;  4U67 E;  2ZJQ E;  2HKD A;  1KQS E;  3I55 E;  2QA4 E;  3IG9 A;  1VQP E;  2OL6 O;  1RJL C;  2ZJR E;  3CCJ E;  4WFB E;  2OY7 A;  1VQL E;  2I5Z O;  3CXC E;  5GAD G;  4WFA E;  4IOA E;  1VQ6 E;  3OW2 E;  3G4S E;  1KD1 G;  4WFN E;  2OY8 A;  3AUM O;  3EC5 A;  1JJ2 E;  2OTJ E;  3J7Z G;  1VQN E;  5B3M O;  2OY5 O;  1RL6 A;  3CPW E;  3CD6 E;  2ZJP E;  2FKG A;  5B2A O;  2OYB O;  3IGE A;  1KC8 G;  1QVF E;  4IO9 E;  1VQ9 E;  1YJ9 E;  4WCE E;  1S72 E;  3PIO E;  3CC2 E;  3CKF A;  3CC7 E;  3I56 E;  1FJ1 E;  2I5V O;  5B10 O;  3PIP E;  3G71 E;  1K9M G;  1W2B E;  1VQO E;  2PI3 O;  5DM6 E;  2G8C O;  1YIJ E; 
#chains in the Genus database with same CATH homology
 1YI2 E;  5GAE G;  1VQM E;  5JVH E;  2CQL A;  3CCL E;  5AN9 B;  1K73 G;  1NJI G;  1N8R G;  1VQ7 E;  3CC4 E;  1VQ4 E;  4IOC E;  1Q82 G;  5GAG G;  2QEX E;  3CMA E;  3CCE E;  1YIT E;  3CCV E;  2OTL E;  1Q81 G;  1VQ5 E;  3CME E;  1Q7Y G;  5GAH G;  1YHQ E;  4WF9 E;  1VQ8 E;  1M1K G;  5H1S I;  3CCR E;  5MLC H;  3CCM E;  3CCQ E;  3CCU E;  3CF5 E;  5JVG E;  5HL7 E;  1YJW E;  1QVG E;  1YJN E;  3DLL E;  4UY8 G;  5DM7 E;  1M90 G;  1Q86 G;  3G6E E;  1K8A G;  1VQK E;  3CCS E;  4U67 E;  2ZJQ E;  1KQS E;  3I55 E;  2QA4 E;  1VQP E;  2ZJR E;  3CCJ E;  4WFB E;  1VQL E;  3CXC E;  5GAD G;  4WFA E;  4IOA E;  1VQ6 E;  3OW2 E;  3G4S E;  1KD1 G;  4WFN E;  1JJ2 E;  2OTJ E;  3J7Z G;  1VQN E;  1RL6 A;  3CPW E;  3CD6 E;  2ZJP E;  1KC8 G;  1QVF E;  4IO9 E;  1VQ9 E;  1YJ9 E;  1S72 E;  4WCE E;  3PIO E;  3CC2 E;  3CC7 E;  3I56 E;  3PIP E;  3G71 E;  1K9M G;  1W2B E;  1VQO E;  5DM6 E;  1YIJ E; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...