1W2BE

Trigger factor ribosome binding domain in complex with 50s
Total Genus 35
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
35
sequence length
172
structure length
172
Chain Sequence
PRVELEIPEDVDAEQDHLDITVEGDNGSVTRRLWYPDIDVSVDGDTVVIESDEDNAKTMSTIGTFQSHIENMFHGVTEGWEYGMEVFYSHFPMQVNVEGDEVVIENFLGEKAPRRTTIHGDTDVEIDGEELTVSGPDIEAVGQTAADIEQLTRINDKDVRVFQDGVYITRKP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ribosome
molecule keywords 23S RRNA
publication title Trigger Factor in Complex with the Ribosome Forms a Molecular Cradle for Nascent Proteins
pubmed doi rcsb
source organism Escherichia coli
total genus 35
structure length 172
sequence length 172
ec nomenclature
pdb deposition date 2004-07-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
E PF00347 Ribosomal_L6 Ribosomal protein L6
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.930.12 Alpha Beta Alpha-Beta Complex Outer Surface Protein A; domain 3 Ribosomal protein L6, alpha-beta domain 1w2bE01
3.90.930.12 Alpha Beta Alpha-Beta Complex Outer Surface Protein A; domain 3 Ribosomal protein L6, alpha-beta domain 1w2bE02
1VQ4E 1VQ8E 3PIPE 3I56E 4WFAE 4WCEE 5HL7E 2OTJE 1KQSE 1YITE 1VQ6E 3CCEE 3CCJE 4WFBE 1KC8G 2CQLA 3CCQE 3G6EE 4IOCE 1YJ9E 1Q82G 1W2BE 5GAGG 1Q81G 3CCLE 1VQOE 1JJ2E 4WF9E 1KD1G 1VQME 3CXCE 5GADG 4IO9E 3CCVE 3CCUE 5DM6E 3I55E 1YJWE 3CCME 3CD6E 1YI2E 1VQNE 3CF5E 1YHQE 5H1SI 5GAEG 3CMAE 4U67E 3OW2E 3CC4E 3CC2E 1K9MG 1K73G 1VQ9E 1VQKE 5MLCH 2ZJRE 2ZJQE 1M1KG 2QA4E 5JVHE 5JVGE 1M90G 1NJIG 1VQPE 4WFNE 3CC7E 1S72E 4UY8G 2OTLE 5GAHG 1K8AG 3CCSE 1VQ7E 2ZJPE 1RL6A 1VQ5E 3CMEE 5DM7E 3G71E 1YJNE 1QVFE 1Q86G 3J7ZG 3CPWE 3DLLE 3PIOE 1YIJE 1QVGE 5AN9B 4IOAE 3G4SE 1VQLE 1Q7YG 3CCRE 2QEXE 1N8RG
chains in the Genus database with same CATH superfamily
1VQ4E 1VQ8E 3PIPE 3I56E 4WFAE 2FKJA 4WCEE 5HL7E 2OTJE 1KQSE 2I5VO 1YITE 5B11O 2OL6O 1VQ6E 3CCEE 3CCJE 4WFBE 2I5ZO 1KC8G 2CQLA 3CCQE 2OL7A 3G6EE 4IOCE 1YJ9E 1Q82G 1W2BE 5GAGG 2G8CO 1Q81G 3CCLE 2FKGA 1VQOE 1JJ2E 3IGEA 1FJ1E 4WF9E 1KD1G 1VQME 3CXCE 5GADG 4IO9E 3CCVE 3CCUE 2OY8A 5DM6E 3I55E 1YJWE 3CCME 5B3MO 3CD6E 1YI2E 1VQNE 3EC5A 3CF5E 1YHQE 5H1SI 5GAEG 3CMAE 4U67E 3OW2E 2HKDA 3CC4E 3CC2E 1K9MG 1K73G 1VQ9E 1VQKE 2OY5O 5MLCH 2ZJRE 2ZJQE 1M1KG 2QA4E 2OL8O 5JVHE 5JVGE 1M90G 1NJIG 1VQPE 4WFNE 3CC7E 1S72E 4UY8G 2OTLE 2AF5A 5GAHG 5B10O 1K8AG 3CCSE 1VQ7E 2OY7A 1RL6A 2ZJPE 1VQ5E 3CMEE 5DM7E 3IG9A 3G71E 1YJNE 3CKGA 1QVFE 1Q86G 3J7ZG 3CPWE 1OSPO 2PI3O 3DLLE 2OY1O 2OYBO 3PIOE 1YIJE 1QVGE 5AN9B 4IOAE 3G4SE 5B2AO 3AUMO 1VQLE 1Q7YG 3CCRE 1P4PA 2QEXE 1N8RG 1RJLC 3CKFA
chains in the Genus database with same CATH topology
1VQ4E 1VQ8E 3PIPE 3I56E 4WFAE 4WCEE 5HL7E 2OTJE 1KQSE 1YITE 1VQ6E 3CCEE 3CCJE 4WFBE 1KC8G 2CQLA 3CCQE 3G6EE 4IOCE 1YJ9E 1Q82G 1W2BE 5GAGG 1Q81G 3CCLE 1VQOE 1JJ2E 4WF9E 1KD1G 1VQME 3CXCE 5GADG 4IO9E 3CCVE 3CCUE 5DM6E 3I55E 1YJWE 3CCME 3CD6E 1YI2E 1VQNE 3CF5E 1YHQE 5H1SI 5GAEG 3CMAE 4U67E 3OW2E 3CC4E 3CC2E 1K9MG 1K73G 1VQ9E 1VQKE 5MLCH 2ZJRE 2ZJQE 1M1KG 2QA4E 5JVHE 5JVGE 1M90G 1NJIG 1VQPE 4WFNE 3CC7E 1S72E 4UY8G 2OTLE 5GAHG 1K8AG 3CCSE 1VQ7E 2ZJPE 1RL6A 1VQ5E 3CMEE 5DM7E 3G71E 1YJNE 1QVFE 1Q86G 3J7ZG 3CPWE 3DLLE 3PIOE 1YIJE 1QVGE 5AN9B 4IOAE 3G4SE 1VQLE 1Q7YG 3CCRE 2QEXE 1N8RG
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1VQ4 E;  1VQ8 E;  3PIP E;  3I56 E;  4WFA E;  4WCE E;  5HL7 E;  2OTJ E;  1KQS E;  1YIT E;  1VQ6 E;  3CCE E;  3CCJ E;  4WFB E;  1KC8 G;  2CQL A;  3CCQ E;  3G6E E;  4IOC E;  1YJ9 E;  1Q82 G;  1W2B E;  5GAG G;  1Q81 G;  3CCL E;  1VQO E;  1JJ2 E;  4WF9 E;  1KD1 G;  1VQM E;  3CXC E;  5GAD G;  4IO9 E;  3CCV E;  3CCU E;  5DM6 E;  3I55 E;  1YJW E;  3CCM E;  3CD6 E;  1YI2 E;  1VQN E;  3CF5 E;  1YHQ E;  5H1S I;  5GAE G;  3CMA E;  4U67 E;  3OW2 E;  3CC4 E;  3CC2 E;  1K9M G;  1K73 G;  1VQ9 E;  1VQK E;  5MLC H;  2ZJR E;  2ZJQ E;  1M1K G;  2QA4 E;  5JVH E;  5JVG E;  1M90 G;  1NJI G;  1VQP E;  4WFN E;  3CC7 E;  1S72 E;  4UY8 G;  2OTL E;  5GAH G;  1K8A G;  3CCS E;  1VQ7 E;  2ZJP E;  1RL6 A;  1VQ5 E;  3CME E;  5DM7 E;  3G71 E;  1YJN E;  1QVF E;  1Q86 G;  3J7Z G;  3CPW E;  3DLL E;  3PIO E;  1YIJ E;  1QVG E;  5AN9 B;  4IOA E;  3G4S E;  1VQL E;  1Q7Y G;  3CCR E;  2QEX E;  1N8R G; 
#chains in the Genus database with same CATH topology
 1VQ4 E;  1VQ8 E;  3PIP E;  3I56 E;  4WFA E;  2FKJ A;  4WCE E;  5HL7 E;  2OTJ E;  1KQS E;  2I5V O;  1YIT E;  5B11 O;  2OL6 O;  1VQ6 E;  3CCE E;  3CCJ E;  4WFB E;  2I5Z O;  1KC8 G;  2CQL A;  3CCQ E;  2OL7 A;  3G6E E;  4IOC E;  1YJ9 E;  1Q82 G;  1W2B E;  5GAG G;  2G8C O;  1Q81 G;  3CCL E;  2FKG A;  1VQO E;  1JJ2 E;  3IGE A;  1FJ1 E;  4WF9 E;  1KD1 G;  1VQM E;  3CXC E;  5GAD G;  4IO9 E;  3CCV E;  3CCU E;  2OY8 A;  5DM6 E;  3I55 E;  1YJW E;  3CCM E;  5B3M O;  3CD6 E;  1YI2 E;  1VQN E;  3EC5 A;  3CF5 E;  1YHQ E;  5H1S I;  5GAE G;  3CMA E;  4U67 E;  3OW2 E;  2HKD A;  3CC4 E;  3CC2 E;  1K9M G;  1K73 G;  1VQ9 E;  1VQK E;  2OY5 O;  5MLC H;  2ZJR E;  2ZJQ E;  1M1K G;  2QA4 E;  2OL8 O;  5JVH E;  5JVG E;  1M90 G;  1NJI G;  1VQP E;  4WFN E;  3CC7 E;  1S72 E;  4UY8 G;  2OTL E;  2AF5 A;  5GAH G;  5B10 O;  1K8A G;  3CCS E;  1VQ7 E;  2OY7 A;  1RL6 A;  2ZJP E;  1VQ5 E;  3CME E;  5DM7 E;  3IG9 A;  3G71 E;  1YJN E;  3CKG A;  1QVF E;  1Q86 G;  3J7Z G;  3CPW E;  1OSP O;  2PI3 O;  3DLL E;  2OY1 O;  2OYB O;  3PIO E;  1YIJ E;  1QVG E;  5AN9 B;  4IOA E;  3G4S E;  5B2A O;  3AUM O;  1VQL E;  1Q7Y G;  3CCR E;  1P4P A;  2QEX E;  1N8R G;  1RJL C;  3CKF A; 
#chains in the Genus database with same CATH homology
 1VQ4 E;  1VQ8 E;  3PIP E;  3I56 E;  4WFA E;  4WCE E;  5HL7 E;  2OTJ E;  1KQS E;  1YIT E;  1VQ6 E;  3CCE E;  3CCJ E;  4WFB E;  1KC8 G;  2CQL A;  3CCQ E;  3G6E E;  4IOC E;  1YJ9 E;  1Q82 G;  1W2B E;  5GAG G;  1Q81 G;  3CCL E;  1VQO E;  1JJ2 E;  4WF9 E;  1KD1 G;  1VQM E;  3CXC E;  5GAD G;  4IO9 E;  3CCV E;  3CCU E;  5DM6 E;  3I55 E;  1YJW E;  3CCM E;  3CD6 E;  1YI2 E;  1VQN E;  3CF5 E;  1YHQ E;  5H1S I;  5GAE G;  3CMA E;  4U67 E;  3OW2 E;  3CC4 E;  3CC2 E;  1K9M G;  1K73 G;  1VQ9 E;  1VQK E;  5MLC H;  2ZJR E;  2ZJQ E;  1M1K G;  2QA4 E;  5JVH E;  5JVG E;  1M90 G;  1NJI G;  1VQP E;  4WFN E;  3CC7 E;  1S72 E;  4UY8 G;  2OTL E;  5GAH G;  1K8A G;  3CCS E;  1VQ7 E;  2ZJP E;  1RL6 A;  1VQ5 E;  3CME E;  5DM7 E;  3G71 E;  1YJN E;  1QVF E;  1Q86 G;  3J7Z G;  3CPW E;  3DLL E;  3PIO E;  1YIJ E;  1QVG E;  5AN9 B;  4IOA E;  3G4S E;  1VQL E;  1Q7Y G;  3CCR E;  2QEX E;  1N8R G; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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