1GJJA

N-terminal constant region of the nuclear envelope protein lap2
Total Genus 42
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
42
Knots found
sequence length
153
structure length
93
Chain Sequence
MPEFLEDPSVLTKDKLKSELVANNVTLPAGEQRKDVYVQLYLQHLTARNRDVTELTNEDLLDQLVKYGVNPGPIVGTTRKLYEKKLLKLREQG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Membrane protein
molecule keywords LAP2
publication title Solution structure of the constant region of nuclear envelope protein LAP2 reveals two LEM-domain structures: one binds BAF and the other binds DNA.
pubmed doi rcsb
source organism Homo sapiens
total genus 42
structure length 93
sequence length 153
other databases KnotProt 2.0: Artifct S 7.4 51 +3.
ec nomenclature
pdb deposition date 2001-06-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03020 LEM LEM domain
A PF08198 Thymopoietin Thymopoietin protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.720.40 Mainly Alpha Orthogonal Bundle Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 1gjjA00
2ODCI 1GJJA 1H9FA 1JEIA 1H9EA 2ODGC
chains in the Genus database with same CATH superfamily
1Y02A 3L0OA 2DK4A 3LLRA 3QKJA 4UZWA 2A8VA 2QNCA 2RNNA 1JJRA 1H1JS 1ZS9A 2W51A 1EN7A 1GL9B 1H9FA 2KVDA 2QNFA 1JEIA 2KVUA 2ODGC 2RNOA 2LD7A 1A8VA 2KVEA 2WQGA 3FLGA 4BITA 1A63A 2KW9A 1JEQA 1A62A 1GJJA 2KFVA 1ZBHA 2HJQA 1H9EA 2LC3A 5CIUA 2G80A 1YNSA 1GKUB 2MPHA 1V66A 1KHCA 2ODCI 2JVWA 1E7LA 1E7DA
chains in the Genus database with same CATH topology
1Y02A 3L0OA 2DK4A 2A8VA 2QNCA 1ZS9A 2W51A 1EN7A 1GL9B 1H9FA 2QNFA 1JEIA 2ODGC 2LD7A 1A8VA 1A63A 1A62A 1GJJA 2KFVA 2HJQA 1H9EA 2LC3A 2G80A 1YNSA 1GKUB 2MPHA 2ODCI 1E7LA 1E7DA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2ODC I;  1GJJ A;  1H9F A;  1JEI A;  1H9E A;  2ODG C; 
#chains in the Genus database with same CATH topology
 1Y02 A;  3L0O A;  2DK4 A;  3LLR A;  3QKJ A;  4UZW A;  2A8V A;  2QNC A;  2RNN A;  1JJR A;  1H1J S;  1ZS9 A;  2W51 A;  1EN7 A;  1GL9 B;  1H9F A;  2KVD A;  2QNF A;  1JEI A;  2KVU A;  2ODG C;  2RNO A;  2LD7 A;  1A8V A;  2KVE A;  2WQG A;  3FLG A;  4BIT A;  1A63 A;  2KW9 A;  1JEQ A;  1A62 A;  1GJJ A;  2KFV A;  1ZBH A;  2HJQ A;  1H9E A;  2LC3 A;  5CIU A;  2G80 A;  1YNS A;  1GKU B;  2MPH A;  1V66 A;  1KHC A;  2ODC I;  2JVW A;  1E7L A;  1E7D A; 
#chains in the Genus database with same CATH homology
 1Y02 A;  3L0O A;  2DK4 A;  2A8V A;  2QNC A;  1ZS9 A;  2W51 A;  1EN7 A;  1GL9 B;  1H9F A;  2QNF A;  1JEI A;  2ODG C;  2LD7 A;  1A8V A;  1A63 A;  1A62 A;  1GJJ A;  2KFV A;  2HJQ A;  1H9E A;  2LC3 A;  2G80 A;  1YNS A;  1GKU B;  2MPH A;  2ODC I;  1E7L A;  1E7D A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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