3EH7A

The structure of a putative 4-hydroxybutyrate coa-transferase from porphyromonas gingivalis w83
Total Genus 125
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
125
sequence length
432
structure length
401
Chain Sequence
AMKDVLAEYASRIVSAEEAVKHIKNGERVALSHAAGVPQSCVDALVQQADLFVEIYHMLCLGEGRADFIPVFFYEVPSMIRKDILHIDVAIVQLSMPDENGYCSFGVSCDYSKPAAESAHLVIGEINRQMPYVHGDNLIHISKLDYIVMADYPIYSLAKPKIGEVEEAIGRNCAELIEDGATLQLGIGAIPDAALLFLKDKKDLGIHTEMFSDGVVELVRSGVITGKKKTLHPGKMVATFLMGSEDVYHFIDKNPDVELYPVDYVNDPRVIAQNDNMVSINSCIEIDLMGQVVSECIGSKQFSGTGGQVDYVRGAAWSKNGKSIMAIPSTAKNGTASRIVPIIAEGAAVTTLRNEVDYVVTEYGIAQLKGKSLRQRAEALIAIAHPDFREELTKHLRKRFG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
molecule keywords 4-hydroxybutyrate CoA-transferase
publication title The structure of a putative 4-hydroxybutyrate CoA-transferase from Porphyromonas gingivalis W83
rcsb
source organism Porphyromonas gingivalis
total genus 125
structure length 401
sequence length 432
ec nomenclature
pdb deposition date 2008-09-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02550 AcetylCoA_hydro Acetyl-CoA hydrolase/transferase N-terminal domain
A PF13336 AcetylCoA_hyd_C Acetyl-CoA hydrolase/transferase C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.750.70 Alpha Beta 2-Layer Sandwich Transcription Regulator spoIIAA 4-hydroxybutyrate coenzyme like domains 3eh7A02
3.40.1080.10 Alpha Beta 3-Layer(aba) Sandwich Glutaconate Coenzyme A-transferase Glutaconate Coenzyme A-transferase 3eh7A01
3.40.1080.20 Alpha Beta 3-Layer(aba) Sandwich Glutaconate Coenzyme A-transferase Glutaconate Coenzyme A-transferase 3eh7A03
5DBNB 2AHUA 1M3EA 3CDKA 1OPEA 2NRBA 3EH7A 3QDQA 3RRLB 4KGBA 2AHWA 3OXOA 2AHVA 1POIB 2NRCA 5DBNA 1O9LA 1K6DA 1XR4A 2HJ0A 3RRLA 2OASA 3GK7A 3DLXA 3CDKB 3K6MA 1POIA 3D3UA 1OOZA 1OOYA
chains in the Genus database with same CATH superfamily
2CWWA 5DBNB 3MOGA 3V8VA 2AHUA 5EUUA 3LDFA 1J7XA 2KA5A 4HIZA 3QDQA 3GVLA 4L8KA 1FC9A 1BPLA 3D03A 1WXXA 3MGLA 3K6MA 2B78A 1FC6A 4QTPA 4JC0A 3F43A 3GVKA 1HF2A 1THNB 2DXNA 1M3EA 1FC7A 3ZXNA 3AGEA 3AGDA 3NY7A 1N6DA 3K50A 3RRLB 3C0KA 1V0EA 3JU4A 4KGBA 5EUZA 2NRCA 4XS5A 5DBNA 2DXLA 1BUZA 2AS0A 3GVJA 3IF5A 3IH9A 3RRLA 2ZOAA 3LKLA 1TILB 3CDKB 3DLXA 3OIRA 3GHFA 3VSEA 5EZBA 1SBOA 3IHBA 1H4YA 3IHAA 4HYLA 2ZO9B 4DMGA 3DORA 3CDKA 3LLOA 4AE2A 2KLNA 1N6EA 1T6RA 3OXOA 2AHVA 1POIB 1H4XA 1O9LA 4DGFA 1AUZA 1K6DA 4L1CA 4DGHA 1TIDB 1TH8B 1K32A 1POIA 3V97A 1N6FA 1VC1A 3OIZA 3DJAA 2OASA 5EUXA 3DUPA 4AEJA 1WXWA 3ZTBA 1FCFA 1OPEA 2VY9A 5EUWA 3EH7A 3GMFA 3IH8A 4GHNA 2NRBA 2AHWA 1XR4A 5EUSA 2HJ0A 3T6OA 3GK7A 1V0FA 3D3UA 1H4ZA 2RRLA 1OOZA 1OOYA
chains in the Genus database with same CATH topology
5DBNB 2AHUA 1M3EA 3CDKA 1OPEA 2NRBA 3EH7A 3QDQA 3RRLB 4KGBA 2AHWA 3OXOA 2AHVA 1POIB 2NRCA 5DBNA 1O9LA 1K6DA 1XR4A 2HJ0A 3RRLA 2OASA 3GK7A 3DLXA 3CDKB 3K6MA 1POIA 3D3UA 1OOZA 1OOYA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5DBN B;  2AHU A;  1M3E A;  3CDK A;  1OPE A;  2NRB A;  3EH7 A;  3QDQ A;  3RRL B;  4KGB A;  2AHW A;  3OXO A;  2AHV A;  1POI B;  2NRC A;  5DBN A;  1O9L A;  1K6D A;  1XR4 A;  2HJ0 A;  3RRL A;  2OAS A;  3GK7 A;  3DLX A;  3CDK B;  3K6M A;  1POI A;  3D3U A;  1OOZ A;  1OOY A; 
#chains in the Genus database with same CATH topology
 2CWW A;  5DBN B;  3MOG A;  3V8V A;  2AHU A;  5EUU A;  3LDF A;  1J7X A;  2KA5 A;  4HIZ A;  3QDQ A;  3GVL A;  4L8K A;  1FC9 A;  1BPL A;  3D03 A;  1WXX A;  3MGL A;  3K6M A;  2B78 A;  1FC6 A;  4QTP A;  4JC0 A;  3F43 A;  3GVK A;  1HF2 A;  1THN B;  2DXN A;  1M3E A;  1FC7 A;  3ZXN A;  3AGE A;  3AGD A;  3NY7 A;  1N6D A;  3K50 A;  3RRL B;  3C0K A;  1V0E A;  3JU4 A;  4KGB A;  5EUZ A;  2NRC A;  4XS5 A;  5DBN A;  2DXL A;  1BUZ A;  2AS0 A;  3GVJ A;  3IF5 A;  3IH9 A;  3RRL A;  2ZOA A;  3LKL A;  1TIL B;  3CDK B;  3DLX A;  3OIR A;  3GHF A;  3VSE A;  5EZB A;  1SBO A;  3IHB A;  1H4Y A;  3IHA A;  4HYL A;  2ZO9 B;  4DMG A;  3DOR A;  3CDK A;  3LLO A;  4AE2 A;  2KLN A;  1N6E A;  1T6R A;  3OXO A;  2AHV A;  1POI B;  1H4X A;  1O9L A;  4DGF A;  1AUZ A;  1K6D A;  4L1C A;  4DGH A;  1TID B;  1TH8 B;  1K32 A;  1POI A;  3V97 A;  1N6F A;  1VC1 A;  3OIZ A;  3DJA A;  2OAS A;  5EUX A;  3DUP A;  4AEJ A;  1WXW A;  3ZTB A;  1FCF A;  1OPE A;  2VY9 A;  5EUW A;  3EH7 A;  3GMF A;  3IH8 A;  4GHN A;  2NRB A;  2AHW A;  1XR4 A;  5EUS A;  2HJ0 A;  3T6O A;  3GK7 A;  1V0F A;  3D3U A;  1H4Z A;  2RRL A;  1OOZ A;  1OOY A; 
#chains in the Genus database with same CATH homology
 5DBN B;  2AHU A;  1M3E A;  3CDK A;  1OPE A;  2NRB A;  3EH7 A;  3QDQ A;  3RRL B;  4KGB A;  2AHW A;  3OXO A;  2AHV A;  1POI B;  2NRC A;  5DBN A;  1O9L A;  1K6D A;  1XR4 A;  2HJ0 A;  3RRL A;  2OAS A;  3GK7 A;  3DLX A;  3CDK B;  3K6M A;  1POI A;  3D3U A;  1OOZ A;  1OOY A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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