1B79A

N-terminal domain of dna replication protein dnab
Total Genus 40
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
40
sequence length
102
structure length
102
Chain Sequence
PPHSIEAEQSVLGGLMLDNERWDDVAERVVADDFYTRPHRHIFTEMARLQESGSPIDLITLAESLERQGQLDSVGGFAYLAELSKNTPSAANISAYADIVRE
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Hydrolase
source organism Escherichia coli
publication title Crystal structure of the N-terminal domain of the DnaB hexameric helicase.
pubmed doi rcsb
molecule keywords DnaB Helicase
total genus 40
structure length 102
sequence length 102
chains with identical sequence B, C, D
ec nomenclature ec 3.6.4.12: DNA helicase.
pdb deposition date 1999-01-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00772 DnaB DnaB-like helicase N terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.860.10 Mainly Alpha Orthogonal Bundle DNAb Helicase; Chain A DNAb Helicase; Chain A 1b79A00
2R5UA 2R6DA 2R6AA 3BGWA 2R6AC 1T3WA 2Q6TA 4ESVA 1JWEA 2HAJA 1Z8SA 2LZNA 2R6CA 4EHSA 2VYFA 4IM9A 2R6CG 1B79A 3GXVA
chains in the Genus database with same CATH superfamily
2R5UA 2R6DA 2R6AA 3BGWA 2R6AC 1T3WA 2Q6TA 4ESVA 1JWEA 2HAJA 1Z8SA 2LZNA 2R6CA 4EHSA 2VYFA 4IM9A 2R6CG 1B79A 3GXVA
chains in the Genus database with same CATH topology
2R5UA 2R6DA 2R6AA 3BGWA 2R6AC 1T3WA 2Q6TA 4ESVA 1JWEA 2HAJA 1Z8SA 2LZNA 2R6CA 4EHSA 2VYFA 4IM9A 2R6CG 1B79A 3GXVA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2R5U A;  2R6D A;  2R6A A;  3BGW A;  2R6A C;  1T3W A;  2Q6T A;  4ESV A;  1JWE A;  2HAJ A;  1Z8S A;  2LZN A;  2R6C A;  4EHS A;  2VYF A;  4IM9 A;  2R6C G;  1B79 A;  3GXV A; 
#chains in the Genus database with same CATH topology
 2R5U A;  2R6D A;  2R6A A;  3BGW A;  2R6A C;  1T3W A;  2Q6T A;  4ESV A;  1JWE A;  2HAJ A;  1Z8S A;  2LZN A;  2R6C A;  4EHS A;  2VYF A;  4IM9 A;  2R6C G;  1B79 A;  3GXV A; 
#chains in the Genus database with same CATH homology
 2R5U A;  2R6D A;  2R6A A;  3BGW A;  2R6A C;  1T3W A;  2Q6T A;  4ESV A;  1JWE A;  2HAJ A;  1Z8S A;  2LZN A;  2R6C A;  4EHS A;  2VYF A;  4IM9 A;  2R6C G;  1B79 A;  3GXV A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...