The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
45
|
sequence length |
125
|
structure length |
125
|
Chain Sequence |
FLNKAFEVALKVQIIAGFDRGLVKWLRVHGRTLSTVQKKALYFVNRRYMQTHWANYMLWINKKIDALGRTPVVGDYTRLGAEIGRRIDMAYFYDFLKDKNMIPKYLPYMEEINRMRPADVPVKYM
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Crystal structure and subunit dynamics of the abalone sperm lysin dimer: egg envelopes dissociate dimers, the monomer is the active species.
pubmed doi rcsb |
| molecule keywords |
SPERM LYSIN
|
| molecule tags |
Fertilization protein
|
| source organism |
Haliotis rufescens
|
| total genus |
45
|
| structure length |
125
|
| sequence length |
125
|
| chains with identical sequence |
B
|
| ec nomenclature | |
| pdb deposition date | 1995-03-03 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF01303 | Egg_lysin | Egg lysin (Sperm-lysin) |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Up-down Bundle | Lysin | Fertilization protein |
#chains in the Genus database with same CATH superfamily 1GAK A; 1LYN A; 2LYN A; 2LIS A; 3LYN A; 1LIS A; #chains in the Genus database with same CATH topology 3OAA A; 4XD7 A; 5DN6 A; 5FL7 A; 4YXW A; 3OEE A; 2QE7 A; 1H8E A; 2LYN A; 4ASU A; 2LIS A; 2V7Q A; 4TSF A; 1W0J A; 3LYN A; 3OFN A; 2W6I A; 1GAK A; 1E1R A; 2WSS A; 3OEH A; 2W6J A; 4Z1M A; 2JIZ A; 1KMH A; 5CDF A; 1FX0 A; 2XOK A; 1OHH A; 1BMF A; 1EFR A; 3FKS A; 2R9V A; 1MAB A; 1NBM A; 3ZIA A; 1SKY B; 2WPD A; 1E79 A; 2F43 A; 2CK3 A; 1LIS A; 1COW A; 2JJ1 A; 2JJ2 A; 2XND A; 4TT3 A; 1LYN A; 1H8H A; 2JDI A; 3CMN A; 1W0K A; 3OE7 A; 1E1Q A; 2HLD A; #chains in the Genus database with same CATH homology 1GAK A; 1LYN A; 2LYN A; 2LIS A; 3LYN A; 1LIS A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
