1W2BW

Trigger factor ribosome binding domain in complex with 50s
Total Genus 21
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
21
sequence length
82
structure length
82
Chain Sequence
ERVVTIPLRDARAEPNHKRADKAMILIREHLAKHFSVDEDAVRLDPSINEAAWARGRANTPSKIRVRAARFEEEGEAIVEAE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
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publication title Trigger Factor in Complex with the Ribosome Forms a Molecular Cradle for Nascent Proteins
pubmed doi rcsb
molecule keywords 23S RRNA
molecule tags Ribosome
source organism Escherichia coli
total genus 21
structure length 82
sequence length 82
ec nomenclature
pdb deposition date 2004-07-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
W PF01198 Ribosomal_L31e Ribosomal protein L31e
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.440.10 Alpha Beta Roll Ribosomal Protein L31e; Chain: W; Ribosomal Protein L31e; Chain: W; 1w2bW00
1YITX 1YIJX 1VQOX 1Q82Y 1Q81Y 3CCVX 3CCQX 1Q86Y 1VQKX 2OTJX 1M90Y 1W2BW 3G6EX 3CC7X 1YHQX 1QVGW 1K8AY 3OW2W 1NJIY 3CD6X 1KQSW 3CCMX 1VQLX 3CXCW 3G4SX 3CCEX 1VQ8X 1K73Y 1VQ5X 3CCLX 3CPWW 3CC2X 1S72X 3CCJX 3CCRX 1VQ9X 1YI2X 1QVFW 1VQMX 1K9MY 2QA4X 3CMAX 3CMEX 3CCSX 1VQ4X 1VQNX 3CC4X 3CCUX 1YJNX 1KD1Y 1JJ2W 1YJ9X 1M1KY 3I56X 3I55X 1VQPX 1Q7YY 2OTLX 1VQ7X 1N8RY 1KC8Y 1VQ6X 2QEXX 1YJWX 3G71X
chains in the Genus database with same CATH superfamily
1YITX 1YIJX 1VQOX 1Q82Y 1Q81Y 3CCVX 3CCQX 1Q86Y 1VQKX 2OTJX 1M90Y 1W2BW 3G6EX 3CC7X 1YHQX 1QVGW 1K8AY 3OW2W 1NJIY 3CD6X 1KQSW 3CCMX 1VQLX 3CXCW 3G4SX 3CCEX 1VQ8X 1K73Y 1VQ5X 3CCLX 3CPWW 3CC2X 1S72X 3CCJX 3CCRX 1VQ9X 1YI2X 1QVFW 1VQMX 1K9MY 2QA4X 3CMAX 3CMEX 3CCSX 1VQ4X 1VQNX 3CC4X 3CCUX 1YJNX 1KD1Y 1JJ2W 1YJ9X 1M1KY 3I56X 3I55X 1VQPX 1Q7YY 2OTLX 1VQ7X 1N8RY 1KC8Y 1VQ6X 2QEXX 1YJWX 3G71X
chains in the Genus database with same CATH topology
1YITX 1YIJX 1VQOX 1Q82Y 1Q81Y 3CCVX 3CCQX 1Q86Y 1VQKX 2OTJX 1M90Y 1W2BW 3G6EX 3CC7X 1YHQX 1QVGW 1K8AY 3OW2W 1NJIY 3CD6X 1KQSW 3CCMX 1VQLX 3CXCW 3G4SX 3CCEX 1VQ8X 1K73Y 1VQ5X 3CCLX 3CPWW 3CC2X 1S72X 3CCJX 3CCRX 1VQ9X 1YI2X 1QVFW 1VQMX 1K9MY 2QA4X 3CMAX 3CMEX 3CCSX 1VQ4X 1VQNX 3CC4X 3CCUX 1YJNX 1KD1Y 1JJ2W 1YJ9X 1M1KY 3I56X 3I55X 1VQPX 1Q7YY 2OTLX 1VQ7X 1N8RY 1KC8Y 1VQ6X 2QEXX 1YJWX 3G71X
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 1YIT X;  1YIJ X;  1VQO X;  1Q82 Y;  1Q81 Y;  3CCV X;  3CCQ X;  1Q86 Y;  1VQK X;  2OTJ X;  1M90 Y;  1W2B W;  3G6E X;  3CC7 X;  1YHQ X;  1QVG W;  1K8A Y;  3OW2 W;  1NJI Y;  3CD6 X;  1KQS W;  3CCM X;  1VQL X;  3CXC W;  3G4S X;  3CCE X;  1VQ8 X;  1K73 Y;  1VQ5 X;  3CCL X;  3CPW W;  3CC2 X;  1S72 X;  3CCJ X;  3CCR X;  1VQ9 X;  1YI2 X;  1QVF W;  1VQM X;  1K9M Y;  2QA4 X;  3CMA X;  3CME X;  3CCS X;  1VQ4 X;  1VQN X;  3CC4 X;  3CCU X;  1YJN X;  1KD1 Y;  1JJ2 W;  1YJ9 X;  1M1K Y;  3I56 X;  3I55 X;  1VQP X;  1Q7Y Y;  2OTL X;  1VQ7 X;  1N8R Y;  1KC8 Y;  1VQ6 X;  2QEX X;  1YJW X;  3G71 X; 
#chains in the Genus database with same CATH topology
 1YIT X;  1YIJ X;  1VQO X;  1Q82 Y;  1Q81 Y;  3CCV X;  3CCQ X;  1Q86 Y;  1VQK X;  2OTJ X;  1M90 Y;  1W2B W;  3G6E X;  3CC7 X;  1YHQ X;  1QVG W;  1K8A Y;  3OW2 W;  1NJI Y;  3CD6 X;  1KQS W;  3CCM X;  1VQL X;  3CXC W;  3G4S X;  3CCE X;  1VQ8 X;  1K73 Y;  1VQ5 X;  3CCL X;  3CPW W;  3CC2 X;  1S72 X;  3CCJ X;  3CCR X;  1VQ9 X;  1YI2 X;  1QVF W;  1VQM X;  1K9M Y;  2QA4 X;  3CMA X;  3CME X;  3CCS X;  1VQ4 X;  1VQN X;  3CC4 X;  3CCU X;  1YJN X;  1KD1 Y;  1JJ2 W;  1YJ9 X;  1M1K Y;  3I56 X;  3I55 X;  1VQP X;  1Q7Y Y;  2OTL X;  1VQ7 X;  1N8R Y;  1KC8 Y;  1VQ6 X;  2QEX X;  1YJW X;  3G71 X; 
#chains in the Genus database with same CATH homology
 1YIT X;  1YIJ X;  1VQO X;  1Q82 Y;  1Q81 Y;  3CCV X;  3CCQ X;  1Q86 Y;  1VQK X;  2OTJ X;  1M90 Y;  1W2B W;  3G6E X;  3CC7 X;  1YHQ X;  1QVG W;  1K8A Y;  3OW2 W;  1NJI Y;  3CD6 X;  1KQS W;  3CCM X;  1VQL X;  3CXC W;  3G4S X;  3CCE X;  1VQ8 X;  1K73 Y;  1VQ5 X;  3CCL X;  3CPW W;  3CC2 X;  1S72 X;  3CCJ X;  3CCR X;  1VQ9 X;  1YI2 X;  1QVF W;  1VQM X;  1K9M Y;  2QA4 X;  3CMA X;  3CME X;  3CCS X;  1VQ4 X;  1VQN X;  3CC4 X;  3CCU X;  1YJN X;  1KD1 Y;  1JJ2 W;  1YJ9 X;  1M1K Y;  3I56 X;  3I55 X;  1VQP X;  1Q7Y Y;  2OTL X;  1VQ7 X;  1N8R Y;  1KC8 Y;  1VQ6 X;  2QEX X;  1YJW X;  3G71 X;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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