3OW2W

Crystal structure of enhanced macrolide bound to 50s ribosomal subunit
Total Genus 20
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
20
sequence length
82
structure length
82
Chain Sequence
ERVVTIPLRDARAEPNHKRADKAMILIREHLAKHFSVDEDAVRLDPSINEAAWARGRANTPSKIRVRAARFEEEGEAIVEAE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
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molecule tags Ribosome
molecule keywords 23S RIBOSOMAL RNA
total genus 20
structure length 82
sequence length 82
ec nomenclature
pdb deposition date 2010-09-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
W PF01198 Ribosomal_L31e Ribosomal protein L31e
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.440.10 Alpha Beta Roll Ribosomal Protein L31e; Chain: W; Ribosomal Protein L31e; Chain: W; 3ow2W00
3CD6X 1Q81Y 1KQSW 1VQLX 1VQNX 3CCVX 1YIJX 1VQ8X 1Q86Y 1S72X 3I55X 3CC4X 1M90Y 1W2BW 3CMAX 1VQPX 1JJ2W 1YJWX 3CCSX 1KC8Y 3CCJX 3CCEX 1VQMX 2OTLX 3CMEX 3CCLX 1K9MY 1VQ9X 1YI2X 3OW2W 3G71X 1KD1Y 1NJIY 3CCUX 1M1KY 1YJ9X 3G4SX 3I56X 2OTJX 1YHQX 3G6EX 1VQOX 3CC7X 1VQ4X 1VQ6X 3CCMX 1QVGW 1QVFW 2QEXX 1YJNX 2QA4X 1VQ5X 3CC2X 1YITX 3CXCW 1Q82Y 1Q7YY 1VQKX 3CCQX 3CCRX 1K73Y 1K8AY 1VQ7X 3CPWW 1N8RY
chains in the Genus database with same CATH superfamily
3CD6X 1Q81Y 1KQSW 1VQLX 1VQNX 3CCVX 1YIJX 1VQ8X 1Q86Y 1S72X 3I55X 3CC4X 1M90Y 1W2BW 3CMAX 1VQPX 1JJ2W 1YJWX 3CCSX 1KC8Y 3CCJX 3CCEX 1VQMX 2OTLX 3CMEX 3CCLX 1K9MY 1VQ9X 1YI2X 3OW2W 3G71X 1KD1Y 1NJIY 3CCUX 1M1KY 1YJ9X 3G4SX 3I56X 2OTJX 1YHQX 3G6EX 1VQOX 3CC7X 1VQ4X 1VQ6X 3CCMX 1QVGW 1QVFW 2QEXX 1YJNX 2QA4X 1VQ5X 3CC2X 1YITX 3CXCW 1Q82Y 1Q7YY 1VQKX 3CCQX 3CCRX 1K73Y 1K8AY 1VQ7X 3CPWW 1N8RY
chains in the Genus database with same CATH topology
3CD6X 1Q81Y 1KQSW 1VQLX 1VQNX 3CCVX 1YIJX 1VQ8X 1Q86Y 1S72X 3I55X 3CC4X 1M90Y 1W2BW 3CMAX 1VQPX 1JJ2W 1YJWX 3CCSX 1KC8Y 3CCJX 3CCEX 1VQMX 2OTLX 3CMEX 3CCLX 1K9MY 1VQ9X 1YI2X 3OW2W 3G71X 1KD1Y 1NJIY 3CCUX 1M1KY 1YJ9X 3G4SX 3I56X 2OTJX 1YHQX 3G6EX 1VQOX 3CC7X 1VQ4X 1VQ6X 3CCMX 1QVGW 1QVFW 2QEXX 1YJNX 2QA4X 1VQ5X 3CC2X 1YITX 3CXCW 1Q82Y 1Q7YY 1VQKX 3CCQX 3CCRX 1K73Y 1K8AY 1VQ7X 3CPWW 1N8RY
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 3CD6 X;  1Q81 Y;  1KQS W;  1VQL X;  1VQN X;  3CCV X;  1YIJ X;  1VQ8 X;  1Q86 Y;  1S72 X;  3I55 X;  3CC4 X;  1M90 Y;  1W2B W;  3CMA X;  1VQP X;  1JJ2 W;  1YJW X;  3CCS X;  1KC8 Y;  3CCJ X;  3CCE X;  1VQM X;  2OTL X;  3CME X;  3CCL X;  1K9M Y;  1VQ9 X;  1YI2 X;  3OW2 W;  3G71 X;  1KD1 Y;  1NJI Y;  3CCU X;  1M1K Y;  1YJ9 X;  3G4S X;  3I56 X;  2OTJ X;  1YHQ X;  3G6E X;  1VQO X;  3CC7 X;  1VQ4 X;  1VQ6 X;  3CCM X;  1QVG W;  1QVF W;  2QEX X;  1YJN X;  2QA4 X;  1VQ5 X;  3CC2 X;  1YIT X;  3CXC W;  1Q82 Y;  1Q7Y Y;  1VQK X;  3CCQ X;  3CCR X;  1K73 Y;  1K8A Y;  1VQ7 X;  3CPW W;  1N8R Y; 
#chains in the Genus database with same CATH topology
 3CD6 X;  1Q81 Y;  1KQS W;  1VQL X;  1VQN X;  3CCV X;  1YIJ X;  1VQ8 X;  1Q86 Y;  1S72 X;  3I55 X;  3CC4 X;  1M90 Y;  1W2B W;  3CMA X;  1VQP X;  1JJ2 W;  1YJW X;  3CCS X;  1KC8 Y;  3CCJ X;  3CCE X;  1VQM X;  2OTL X;  3CME X;  3CCL X;  1K9M Y;  1VQ9 X;  1YI2 X;  3OW2 W;  3G71 X;  1KD1 Y;  1NJI Y;  3CCU X;  1M1K Y;  1YJ9 X;  3G4S X;  3I56 X;  2OTJ X;  1YHQ X;  3G6E X;  1VQO X;  3CC7 X;  1VQ4 X;  1VQ6 X;  3CCM X;  1QVG W;  1QVF W;  2QEX X;  1YJN X;  2QA4 X;  1VQ5 X;  3CC2 X;  1YIT X;  3CXC W;  1Q82 Y;  1Q7Y Y;  1VQK X;  3CCQ X;  3CCR X;  1K73 Y;  1K8A Y;  1VQ7 X;  3CPW W;  1N8R Y; 
#chains in the Genus database with same CATH homology
 3CD6 X;  1Q81 Y;  1KQS W;  1VQL X;  1VQN X;  3CCV X;  1YIJ X;  1VQ8 X;  1Q86 Y;  1S72 X;  3I55 X;  3CC4 X;  1M90 Y;  1W2B W;  3CMA X;  1VQP X;  1JJ2 W;  1YJW X;  3CCS X;  1KC8 Y;  3CCJ X;  3CCE X;  1VQM X;  2OTL X;  3CME X;  3CCL X;  1K9M Y;  1VQ9 X;  1YI2 X;  3OW2 W;  3G71 X;  1KD1 Y;  1NJI Y;  3CCU X;  1M1K Y;  1YJ9 X;  3G4S X;  3I56 X;  2OTJ X;  1YHQ X;  3G6E X;  1VQO X;  3CC7 X;  1VQ4 X;  1VQ6 X;  3CCM X;  1QVG W;  1QVF W;  2QEX X;  1YJN X;  2QA4 X;  1VQ5 X;  3CC2 X;  1YIT X;  3CXC W;  1Q82 Y;  1Q7Y Y;  1VQK X;  3CCQ X;  3CCR X;  1K73 Y;  1K8A Y;  1VQ7 X;  3CPW W;  1N8R Y;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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