2QEXX

Negamycin binds to the wall of the nascent chain exit tunnel of the 50s ribosomal subunit
Total Genus 18
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
18
sequence length
82
structure length
82
Chain Sequence
ERVVTIPLRDARAEPNHKRADKAMILIREHLAKHFSVDEDAVRLDPSINEAAWARGRANTPSKIRVRAARFEEEGEAIVEAE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ribosome
molecule keywords 23S ribosomal RNA
publication title Negamycin binds to the wall of the nascent chain exit tunnel of the 50S ribosomal subunit.
pubmed doi rcsb
total genus 18
structure length 82
sequence length 82
ec nomenclature
pdb deposition date 2007-06-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
X PF01198 Ribosomal_L31e Ribosomal protein L31e
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.440.10 Alpha Beta Roll Ribosomal Protein L31e; Chain: W; Ribosomal Protein L31e; Chain: W; 2qexX00
3CD6X 1VQNX 1VQ5X 1YITX 1VQ8X 2QEXX 1VQ6X 1K8AY 3G71X 3CCQX 3CCUX 1YI2X 1YJWX 1S72X 1Q7YY 1W2BW 3G6EX 3CC2X 3CCRX 3G4SX 3CCSX 3CXCW 1Q86Y 2QA4X 1N8RY 1VQLX 3CC7X 3CCVX 3I55X 3CCLX 1K9MY 1VQ9X 1K73Y 1VQ7X 1VQ4X 1YJ9X 1QVGW 1QVFW 3CPWW 1VQOX 1YIJX 1YJNX 1Q82Y 1KD1Y 1M90Y 1NJIY 3CCEX 3CMAX 3CCMX 2OTLX 1JJ2W 1Q81Y 3OW2W 1KC8Y 3I56X 3CMEX 3CCJX 1M1KY 3CC4X 1YHQX 1VQMX 1VQPX 1VQKX 1KQSW 2OTJX
chains in the Genus database with same CATH superfamily
3CD6X 1VQNX 1VQ5X 1YITX 1VQ8X 2QEXX 1VQ6X 1K8AY 3G71X 3CCQX 3CCUX 1YI2X 1YJWX 1S72X 1Q7YY 1W2BW 3G6EX 3CC2X 3CCRX 3G4SX 3CCSX 3CXCW 1Q86Y 2QA4X 1N8RY 1VQLX 3CC7X 3CCVX 3I55X 3CCLX 1K9MY 1VQ9X 1K73Y 1VQ7X 1VQ4X 1YJ9X 1QVGW 1QVFW 3CPWW 1VQOX 1YIJX 1YJNX 1Q82Y 1KD1Y 1M90Y 1NJIY 3CCEX 3CMAX 3CCMX 2OTLX 1JJ2W 1Q81Y 3OW2W 1KC8Y 3I56X 3CMEX 3CCJX 1M1KY 3CC4X 1YHQX 1VQMX 1VQPX 1VQKX 1KQSW 2OTJX
chains in the Genus database with same CATH topology
3CD6X 1VQNX 1VQ5X 1YITX 1VQ8X 2QEXX 1VQ6X 1K8AY 3G71X 3CCQX 3CCUX 1YI2X 1YJWX 1S72X 1Q7YY 1W2BW 3G6EX 3CC2X 3CCRX 3G4SX 3CCSX 3CXCW 1Q86Y 2QA4X 1N8RY 1VQLX 3CC7X 3CCVX 3I55X 3CCLX 1K9MY 1VQ9X 1K73Y 1VQ7X 1VQ4X 1YJ9X 1QVGW 1QVFW 3CPWW 1VQOX 1YIJX 1YJNX 1Q82Y 1KD1Y 1M90Y 1NJIY 3CCEX 3CMAX 3CCMX 2OTLX 1JJ2W 1Q81Y 3OW2W 1KC8Y 3I56X 3CMEX 3CCJX 1M1KY 3CC4X 1YHQX 1VQMX 1VQPX 1VQKX 1KQSW 2OTJX
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3CD6 X;  1VQN X;  1VQ5 X;  1YIT X;  1VQ8 X;  2QEX X;  1VQ6 X;  1K8A Y;  3G71 X;  3CCQ X;  3CCU X;  1YI2 X;  1YJW X;  1S72 X;  1Q7Y Y;  1W2B W;  3G6E X;  3CC2 X;  3CCR X;  3G4S X;  3CCS X;  3CXC W;  1Q86 Y;  2QA4 X;  1N8R Y;  1VQL X;  3CC7 X;  3CCV X;  3I55 X;  3CCL X;  1K9M Y;  1VQ9 X;  1K73 Y;  1VQ7 X;  1VQ4 X;  1YJ9 X;  1QVG W;  1QVF W;  3CPW W;  1VQO X;  1YIJ X;  1YJN X;  1Q82 Y;  1KD1 Y;  1M90 Y;  1NJI Y;  3CCE X;  3CMA X;  3CCM X;  2OTL X;  1JJ2 W;  1Q81 Y;  3OW2 W;  1KC8 Y;  3I56 X;  3CME X;  3CCJ X;  1M1K Y;  3CC4 X;  1YHQ X;  1VQM X;  1VQP X;  1VQK X;  1KQS W;  2OTJ X; 
#chains in the Genus database with same CATH topology
 3CD6 X;  1VQN X;  1VQ5 X;  1YIT X;  1VQ8 X;  2QEX X;  1VQ6 X;  1K8A Y;  3G71 X;  3CCQ X;  3CCU X;  1YI2 X;  1YJW X;  1S72 X;  1Q7Y Y;  1W2B W;  3G6E X;  3CC2 X;  3CCR X;  3G4S X;  3CCS X;  3CXC W;  1Q86 Y;  2QA4 X;  1N8R Y;  1VQL X;  3CC7 X;  3CCV X;  3I55 X;  3CCL X;  1K9M Y;  1VQ9 X;  1K73 Y;  1VQ7 X;  1VQ4 X;  1YJ9 X;  1QVG W;  1QVF W;  3CPW W;  1VQO X;  1YIJ X;  1YJN X;  1Q82 Y;  1KD1 Y;  1M90 Y;  1NJI Y;  3CCE X;  3CMA X;  3CCM X;  2OTL X;  1JJ2 W;  1Q81 Y;  3OW2 W;  1KC8 Y;  3I56 X;  3CME X;  3CCJ X;  1M1K Y;  3CC4 X;  1YHQ X;  1VQM X;  1VQP X;  1VQK X;  1KQS W;  2OTJ X; 
#chains in the Genus database with same CATH homology
 3CD6 X;  1VQN X;  1VQ5 X;  1YIT X;  1VQ8 X;  2QEX X;  1VQ6 X;  1K8A Y;  3G71 X;  3CCQ X;  3CCU X;  1YI2 X;  1YJW X;  1S72 X;  1Q7Y Y;  1W2B W;  3G6E X;  3CC2 X;  3CCR X;  3G4S X;  3CCS X;  3CXC W;  1Q86 Y;  2QA4 X;  1N8R Y;  1VQL X;  3CC7 X;  3CCV X;  3I55 X;  3CCL X;  1K9M Y;  1VQ9 X;  1K73 Y;  1VQ7 X;  1VQ4 X;  1YJ9 X;  1QVG W;  1QVF W;  3CPW W;  1VQO X;  1YIJ X;  1YJN X;  1Q82 Y;  1KD1 Y;  1M90 Y;  1NJI Y;  3CCE X;  3CMA X;  3CCM X;  2OTL X;  1JJ2 W;  1Q81 Y;  3OW2 W;  1KC8 Y;  3I56 X;  3CME X;  3CCJ X;  1M1K Y;  3CC4 X;  1YHQ X;  1VQM X;  1VQP X;  1VQK X;  1KQS W;  2OTJ X; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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