1W4JA

Peripheral-subunit binding domains from mesophilic, thermophilic, and hyperthermophilic bacteria fold by ultrafast, apparently two-state transitions
Total Genus 11
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
11
sequence length
51
structure length
51
Chain Sequence
GSREVAAMPAARRLAKELGIDASKVKGTGPGGVITVEDVKRWAEETAKATA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Ultra-fast barrier-limited folding in the peripheral subunit-binding domain family.
pubmed doi rcsb
molecule tags Transferase
source organism Pyrobaculum aerophilum
molecule keywords PYRUVATE DEHYDROGENASE E2
total genus 11
structure length 51
sequence length 51
ec nomenclature ec 2.3.1.12: Dihydrolipoyllysine-residue acetyltransferase.
pdb deposition date 2004-07-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02817 E3_binding e3 binding domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
4.10.320.10 Few Secondary Structures Irregular Dihydrolipoamide Transferase E3-binding domain 1w4jA00
1W4JA 3RNME 4QOYE 1ZY8K 2EQ9C 1W4IA 2BTHA 2F60K 3DVAI 2BTGA 1W4HA 1W85I 2WXCA 1W88I 1EBDC 1ZWVA 1W3DA 1W4KA 1W4EA 1W4FA 1W4GA 2F5ZK 2PDDA 3DV0I 1BALA 2PDEA
chains in the Genus database with same CATH superfamily
1W4JA 3RNME 4QOYE 1ZY8K 2EQ9C 1W4IA 2BTHA 2F60K 3DVAI 2BTGA 1W4HA 1W85I 2WXCA 1W88I 1EBDC 1ZWVA 1W3DA 1W4KA 1W4EA 1W4FA 1W4GA 2F5ZK 2PDDA 3DV0I 1BALA 2PDEA
chains in the Genus database with same CATH topology
1W4JA 3RNME 4QOYE 1ZY8K 2EQ9C 1W4IA 2BTHA 2F60K 3DVAI 2BTGA 1W4HA 1W85I 2WXCA 1W88I 1EBDC 1ZWVA 1W3DA 1W4KA 1W4EA 1W4FA 1W4GA 2F5ZK 2PDDA 3DV0I 1BALA 2PDEA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1W4J A;  3RNM E;  4QOY E;  1ZY8 K;  2EQ9 C;  1W4I A;  2BTH A;  2F60 K;  3DVA I;  2BTG A;  1W4H A;  1W85 I;  2WXC A;  1W88 I;  1EBD C;  1ZWV A;  1W3D A;  1W4K A;  1W4E A;  1W4F A;  1W4G A;  2F5Z K;  2PDD A;  3DV0 I;  1BAL A;  2PDE A; 
#chains in the Genus database with same CATH topology
 1W4J A;  3RNM E;  4QOY E;  1ZY8 K;  2EQ9 C;  1W4I A;  2BTH A;  2F60 K;  3DVA I;  2BTG A;  1W4H A;  1W85 I;  2WXC A;  1W88 I;  1EBD C;  1ZWV A;  1W3D A;  1W4K A;  1W4E A;  1W4F A;  1W4G A;  2F5Z K;  2PDD A;  3DV0 I;  1BAL A;  2PDE A; 
#chains in the Genus database with same CATH homology
 1W4J A;  3RNM E;  4QOY E;  1ZY8 K;  2EQ9 C;  1W4I A;  2BTH A;  2F60 K;  3DVA I;  2BTG A;  1W4H A;  1W85 I;  2WXC A;  1W88 I;  1EBD C;  1ZWV A;  1W3D A;  1W4K A;  1W4E A;  1W4F A;  1W4G A;  2F5Z K;  2PDD A;  3DV0 I;  1BAL A;  2PDE A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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