1CFHA

Structure of the metal-free gamma-carboxyglutamic acid-rich membrane binding region of factor ix by two-dimensional nmr spectroscopy
Total Genus 3
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
3
sequence length
47
structure length
47
Chain Sequence
YNSGKLEEFVQGNLERECMEEKCSFEEAREVFENTERTTEFWKQYVD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Coagulation factor
molecule keywords COAGULATION FACTOR IX
publication title Structure of the metal-free gamma-carboxyglutamic acid-rich membrane binding region of factor IX by two-dimensional NMR spectroscopy.
pubmed doi rcsb
source organism Homo sapiens
total genus 3
structure length 47
sequence length 47
ec nomenclature ec 3.4.21.22: Coagulation factor IXa.
pdb deposition date 1995-02-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00594 Gla Vitamin K-dependent carboxylation/gamma-carboxyglutamic (GLA) domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
4.10.740.10 Few Secondary Structures Irregular Coagulation Factor IX Coagulation Factor IX 1cfhA00
1WHFA 1CFHA 1P0SL 1PFXL 1WHEA
chains in the Genus database with same CATH superfamily
1WHFA 1CFHA 1P0SL 1PFXL 1WHEA
chains in the Genus database with same CATH topology
1WHFA 1CFHA 1P0SL 1PFXL 1WHEA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1WHF A;  1CFH A;  1P0S L;  1PFX L;  1WHE A; 
#chains in the Genus database with same CATH topology
 1WHF A;  1CFH A;  1P0S L;  1PFX L;  1WHE A; 
#chains in the Genus database with same CATH homology
 1WHF A;  1CFH A;  1P0S L;  1PFX L;  1WHE A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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