2BJF | Genus

Total Genus 96

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	96
sequence length	328
structure length	328
Chain Sequence	CTGLALETKDGLHLFGRNMDIEYSFNQSIIFIPRNFKCVNKSNKKELTTKYAVLGMGTIFDDYPTFADGMNEKGLGCAGLNFPVYVSYSKEDIEGKTNIPVYNFLLWVLANFSSVEEVKEALKNANIVDIPISENIPNTTLHWMISDITGKSIVVEQTKEKLNVFDNNIGVLTNSPTFDWHVANLNQYVGLRYNQVPEFKLGDQSLTALGQGTGLVGLPGDFTPASRFIRVAFLRDAMIKNDKDSIDLIEFFHILNNVAMVRGSTRTVEEKSDLTQYTSCMCLEKGIYYYNTYENNQINAIDMNKENLDGNEIKTYKYNKTLSINHVN

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 328 atoms

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328 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

publication title	Conjugated Bile Acid Hydrolase is a Tetrameric N-Terminal Thiol Hydrolase with Specific Recognition of its Cholyl But not of its Tauryl Product pubmed doi rcsb
molecule keywords	CHOLOYLGLYCINE HYDROLASE
molecule tags	Hydrolase
source organism	Clostridium perfringens
total genus	96
structure length	328
sequence length	328
ec nomenclature	ec 3.5.1.24: Choloylglycine hydrolase.
pdb deposition date	2005-02-02

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF02275	CBAH	Linear amide C-N hydrolases, choloylglycine hydrolase family

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.60.60.10	Alpha Beta	4-Layer Sandwich	Penicillin V Acylase; Chain A	Penicillin V Acylase; Chain A	2bjfA01

5HKEA 3PVAA 2QUYA 2HF0A 3GVZA 2RF8A 2RG2A 3HBCA 2BJGA 4WL2A 2HEZA 2Z71A 2X1CA 2X1DA 4WL3A 2RLCA 2IWMA 2X1EA 3MJIA 2PVAA 2OQCA 2BJFA
chains in the Genus database with same CATH superfamily

5HKEA 3PVAA 2QUYA 2HF0A 3GVZA 2RF8A 3FGTB 2RG2A 4BWCB 3HBCA 2BJGA 4WL2A 2HEZA 2Z71A 2X1CA 2X1DA 4WL3A 2RLCA 2IWMA 2X1EA 3FBXA 3FGRB 3MJIA 2PVAA 2OQCA 3FGWA 2BJFA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 5HKE A;  3PVA A;  2QUY A;  2HF0 A;  3GVZ A;  2RF8 A;  2RG2 A;  3HBC A;  2BJG A;  4WL2 A;  2HEZ A;  2Z71 A;  2X1C A;  2X1D A;  4WL3 A;  2RLC A;  2IWM A;  2X1E A;  3MJI A;  2PVA A;  2OQC A;  2BJF A; 
#chains in the Genus database with same CATH topology
 5HKE A;  3PVA A;  2QUY A;  2HF0 A;  3GVZ A;  2RF8 A;  3FGT B;  2RG2 A;  4BWC B;  3HBC A;  2BJG A;  4WL2 A;  2HEZ A;  2Z71 A;  2X1C A;  2X1D A;  4WL3 A;  2RLC A;  2IWM A;  2X1E A;  3FBX A;  3FGR B;  3MJI A;  2PVA A;  2OQC A;  3FGW A;  2BJF A; 
#chains in the Genus database with same CATH homology
 5HKE A;  3PVA A;  2QUY A;  2HF0 A;  3GVZ A;  2RF8 A;  3FGT B;  2RG2 A;  4BWC B;  3HBC A;  2BJG A;  4WL2 A;  2HEZ A;  2Z71 A;  2X1C A;  2X1D A;  4WL3 A;  2RLC A;  2IWM A;  2X1E A;  3FBX A;  3FGR B;  3MJI A;  2PVA A;  2OQC A;  3FGW A;  2BJF A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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2BJFA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations