The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
114
|
sequence length |
375
|
structure length |
375
|
Chain Sequence |
SMQELFNNLMELCKDSQRKFFYSDDVSASGRTYRIFSYNYASYSDWLLPDALECRGIMFEMDGEKPVRIASRPMEKFFNLNENPFTMNIDLNDVDYILTKEDGSLVSTYLDGDEILFKSKGSIKSEQALMANGILMNINHHRLRDRLKELAEDGFTANFEFVAPTNRIVLAYQEMKIILLNVRENETGEYISYDDIYKDATLRPYLVERYEIDSPKWIEEAKNAENIEGYVAVMKDGSHFKIKSDWYVSLHSTKSSLDNPEKLFKTIIDGASDDLKAMYADDEYSYRKIEAFETTYLKYLDRALFLVLDCHNKHCGKDRKTYAMEAQGVAKGAGMDHLFGIIMSLYQGYDSQEKVMCEIEQNFLKNYKKFIPEGY
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule tags |
Ligase
|
| molecule keywords |
RNA LIGASE
|
| publication title |
Molecular Architecture and Ligand Recognition Determinants for T4 RNA Ligase
pubmed doi rcsb |
| source organism |
Bacteriophage t4
|
| total genus |
114
|
| structure length |
375
|
| sequence length |
375
|
| chains with identical sequence |
B
|
| ec nomenclature |
ec
6.5.1.3: RNA ligase (ATP). |
| pdb deposition date | 2005-11-01 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF09511 | RNA_lig_T4_1 | RNA ligase |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Orthogonal Bundle | eoxyguanosinetriphosphate triphosphohydrolase fold | eoxyguanosinetriphosphate triphosphohydrolase fold |
#chains in the Genus database with same CATH superfamily 2C5U A; #chains in the Genus database with same CATH topology 2PGS A; 3BG2 A; 2C5U A; #chains in the Genus database with same CATH homology 2C5U A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
