The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
72
|
sequence length |
219
|
structure length |
219
|
Chain Sequence |
MDREAFVQTLTACRLCPRLVAWREEVVGRKRAFRGEPYWARPVPGFGDPEARILLFGLAPGAHGSNRTGRPFTGDASGAFLYPLLHEAGLSSKPESLPGDDLRLYGVYLTAAVRCAPPKNKPTPEELRACARWTEVELGLLPEVRVYVALGRIALEALLAHFGLRKSAHPFRHGAHYPLPGGRHLLASYHVSRQNTQTGRLTREMFLEVLMEAKRLAGL
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule tags |
Hydrolase/dna
|
| molecule keywords |
5'-D(*AP*TP*GP*TP*TP*GP*CP*(D1P)P*TP*TP*AP*GP*TP*CP*C)-3'
|
| publication title |
Structure of Family 5 Uracil-DNA Glycosylase Bound to DNA Reveals Insights into the Mechanism for Substrate Recognition and Catalysis
rcsb |
| source organism |
Thermus thermophilus
|
| total genus |
72
|
| structure length |
219
|
| sequence length |
219
|
| ec nomenclature |
ec
3.2.2.-: |
| pdb deposition date | 2006-05-07 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF03167 | UDG | Uracil DNA glycosylase superfamily |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 3-Layer(aba) Sandwich | Uracil-DNA Glycosylase, subunit E | Uracil-DNA glycosylase-like domain |
#chains in the Genus database with same CATH superfamily 5T2W A; 1VK2 A; 4WRV A; 3EUG A; 4ODA A; 4DOF A; 2UUG A; 1OE5 A; 4XEG A; 5JK7 D; 4DOG A; 2D07 A; 4WRZ A; 3UFJ A; 1EUI A; 1MWI A; 5H98 A; 1LQG A; 4WPK A; 1L9G A; 4JGC A; 1AKZ A; 5H99 A; 4Z47 A; 4WPL A; 1UUG A; 5JKS A; 4WRU A; 1EMJ A; 4IRB A; 5AYR A; 4EUG A; 1LAU E; 2DDG A; 5H9I A; 3A7N A; 5AYS A; 1FLZ A; 2SSP E; 4QCB A; 5EUG A; 2OWQ A; 4ZBZ A; 3CXM A; 3IKB A; 5JXY A; 5CYS A; 1SSP E; 4ZBY A; 4WS1 A; 1MUG A; 2D3Y A; 1UGH E; 4LZB A; 2C53 A; 4WRY A; 4Z3A A; 5FF8 A; 4Z7B A; 3ZOR A; 1UDG A; 2C2P A; 1LQJ A; 4ZBX A; 4WRX A; 1EMH A; 5JX8 A; 4WS2 A; 4FNC A; 4SKN E; 4YIG A; 1EUG A; 2C2Q A; 4WS8 A; 2OXM A; 3TKB A; 2JHQ A; 1OE4 A; 4Z7Z A; 4WS4 A; 4QC9 A; 2ZHX A; 4WS5 A; 2L3F A; 1UI0 A; 4WS3 A; 3WDF A; 5JKR A; 5JX3 A; 3UFM A; 4YGM A; 5HF7 A; 1MWJ A; 2EUG A; 4WS7 A; 3NT7 A; 3UF7 A; 3FCK B; 5JX0 A; 1UDI E; 1UI1 A; 4OD8 A; 1UDH A; 3UOB A; 2C56 A; 4WS6 A; 4QCA A; 2BOO A; 3ZOQ A; 2DEM A; 3WDG A; 1WYW A; 2OYT A; 2HXM A; 4L5N A; 3TR7 A; 1OE6 A; 1MTL A; 2J8X A; 4WS0 A; 5H93 A; 1OKB A; 1LQM A; 5JKT A; 2DP6 A; 1YUO A; 4UQM A; 1Q3F A; 4LYL A; 3FCL A; 2RBA A; 3FCI A; 4WRW A; 3FCF A; 3UO7 A; #chains in the Genus database with same CATH topology 5T2W A; 1VK2 A; 4WRV A; 3EUG A; 4ODA A; 4DOF A; 2UUG A; 1OE5 A; 4XEG A; 5JK7 D; 4DOG A; 2D07 A; 4WRZ A; 3UFJ A; 1EUI A; 1MWI A; 5H98 A; 1LQG A; 4WPK A; 1L9G A; 4JGC A; 1AKZ A; 5H99 A; 4Z47 A; 4WPL A; 1UUG A; 5JKS A; 4WRU A; 1EMJ A; 4IRB A; 5AYR A; 4EUG A; 1LAU E; 2DDG A; 5H9I A; 3A7N A; 5AYS A; 1FLZ A; 2SSP E; 4QCB A; 5EUG A; 2OWQ A; 4ZBZ A; 3CXM A; 3IKB A; 5JXY A; 5CYS A; 1SSP E; 4ZBY A; 4WS1 A; 1MUG A; 2D3Y A; 1UGH E; 4LZB A; 2C53 A; 4WRY A; 4Z3A A; 5FF8 A; 4Z7B A; 3ZOR A; 1UDG A; 2C2P A; 1LQJ A; 4ZBX A; 4WRX A; 1EMH A; 5JX8 A; 4WS2 A; 4FNC A; 4SKN E; 4YIG A; 1EUG A; 2C2Q A; 4WS8 A; 2OXM A; 3TKB A; 2JHQ A; 1OE4 A; 4Z7Z A; 4WS4 A; 4QC9 A; 2ZHX A; 4WS5 A; 2L3F A; 1UI0 A; 4WS3 A; 3WDF A; 5JKR A; 5JX3 A; 3UFM A; 4YGM A; 5HF7 A; 1MWJ A; 2EUG A; 4WS7 A; 3NT7 A; 3UF7 A; 3FCK B; 5JX0 A; 1UDI E; 1UI1 A; 4OD8 A; 1UDH A; 3UOB A; 2C56 A; 4WS6 A; 4QCA A; 2BOO A; 3ZOQ A; 2DEM A; 3WDG A; 1WYW A; 2OYT A; 2HXM A; 4L5N A; 3TR7 A; 1OE6 A; 1MTL A; 2J8X A; 4WS0 A; 5H93 A; 1OKB A; 1LQM A; 5JKT A; 2DP6 A; 1YUO A; 4UQM A; 1Q3F A; 4LYL A; 3FCL A; 2RBA A; 3FCI A; 4WRW A; 3FCF A; 3UO7 A; #chains in the Genus database with same CATH homology 5T2W A; 1VK2 A; 4WRV A; 3EUG A; 4ODA A; 4DOF A; 2UUG A; 1OE5 A; 4XEG A; 5JK7 D; 4DOG A; 2D07 A; 4WRZ A; 3UFJ A; 1EUI A; 1MWI A; 5H98 A; 1LQG A; 4WPK A; 1L9G A; 4JGC A; 1AKZ A; 5H99 A; 4Z47 A; 4WPL A; 1UUG A; 5JKS A; 4WRU A; 1EMJ A; 4IRB A; 5AYR A; 4EUG A; 1LAU E; 2DDG A; 5H9I A; 3A7N A; 5AYS A; 1FLZ A; 2SSP E; 4QCB A; 5EUG A; 2OWQ A; 4ZBZ A; 3CXM A; 3IKB A; 5JXY A; 5CYS A; 1SSP E; 4ZBY A; 4WS1 A; 1MUG A; 2D3Y A; 1UGH E; 4LZB A; 2C53 A; 4WRY A; 4Z3A A; 5FF8 A; 4Z7B A; 3ZOR A; 1UDG A; 2C2P A; 1LQJ A; 4ZBX A; 4WRX A; 1EMH A; 5JX8 A; 4WS2 A; 4FNC A; 4SKN E; 4YIG A; 1EUG A; 2C2Q A; 4WS8 A; 2OXM A; 3TKB A; 2JHQ A; 1OE4 A; 4Z7Z A; 4WS4 A; 4QC9 A; 2ZHX A; 4WS5 A; 2L3F A; 1UI0 A; 4WS3 A; 3WDF A; 5JKR A; 5JX3 A; 3UFM A; 4YGM A; 5HF7 A; 1MWJ A; 2EUG A; 4WS7 A; 3NT7 A; 3UF7 A; 3FCK B; 5JX0 A; 1UDI E; 1UI1 A; 4OD8 A; 1UDH A; 3UOB A; 2C56 A; 4WS6 A; 4QCA A; 2BOO A; 3ZOQ A; 2DEM A; 3WDG A; 1WYW A; 2OYT A; 2HXM A; 4L5N A; 3TR7 A; 1OE6 A; 1MTL A; 2J8X A; 4WS0 A; 5H93 A; 1OKB A; 1LQM A; 5JKT A; 2DP6 A; 1YUO A; 4UQM A; 1Q3F A; 4LYL A; 3FCL A; 2RBA A; 3FCI A; 4WRW A; 3FCF A; 3UO7 A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
