The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
63
|
sequence length |
221
|
structure length |
221
|
Chain Sequence |
FFGESWKKHLSGEFGKPYFIKLMGFVAEERKHYTVYPPPHQVFTWTQMCDIKDVKVVILGQDPYHGPNQAHGLCFSVQRPVPPPPSLENIYKELSTDIEDFVHPGHGDLSGWAKQGVLLLNAVLTVRAHQANSHKERGWEQFTDAVVSWLNQNSNGLVFLLWGSYAQKKGSAIDRKRHHVLQTAHPSPLSVYRGFFGCRHFSKTNELLQKSGKKPIDWKEL
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule tags |
Viral protein/dna binding protein
|
| molecule keywords |
DNA damage-binding protein 1
|
| publication title |
The DDB1-DCAF1-Vpr-UNG2 crystal structure reveals how HIV-1 Vpr steers human UNG2 toward destruction.
pubmed doi rcsb |
| source organism |
Homo sapiens
|
| total genus |
63
|
| structure length |
221
|
| sequence length |
221
|
| chains with identical sequence |
G
|
| ec nomenclature |
ec
3.2.2.27: Uracil-DNA glycosylase. |
| pdb deposition date | 2016-04-26 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| D | PF03167 | UDG | Uracil DNA glycosylase superfamily |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 3-Layer(aba) Sandwich | Uracil-DNA Glycosylase, subunit E | Uracil-DNA glycosylase-like domain |
#chains in the Genus database with same CATH superfamily 5JKT A; 4ZBX A; 1EUG A; 4WS2 A; 4UQM A; 1MWI A; 4WS5 A; 1LQM A; 1L9G A; 4XEG A; 1AKZ A; 2L3F A; 1YUO A; 4ODA A; 1MTL A; 5JXY A; 4Z7Z A; 5H93 A; 4WS1 A; 5AYR A; 1Q3F A; 2D07 A; 5H98 A; 4DOF A; 3NT7 A; 1LQJ A; 3ZOR A; 1LQG A; 5T2W A; 4OD8 A; 4WS4 A; 2C2P A; 3FCF A; 1UUG A; 5H99 A; 4DOG A; 2DDG A; 4QCA A; 1UI0 A; 4WS6 A; 4WRZ A; 4IRB A; 4WS7 A; 3UFJ A; 4L5N A; 1EMH A; 4Z7B A; 4Z47 A; 4WRU A; 2RBA A; 1SSP E; 5CYS A; 4SKN E; 1OE4 A; 5JX8 A; 1OE6 A; 1LAU E; 4Z3A A; 2C53 A; 2C2Q A; 4WPK A; 1WYW A; 3ZOQ A; 5H9I A; 3UO7 A; 4WS0 A; 1VK2 A; 3CXM A; 2SSP E; 2D3Y A; 3UFM A; 1UDH A; 1UDI E; 2OXM A; 3UF7 A; 1OE5 A; 5JK7 D; 5JKS A; 2HXM A; 4ZBY A; 1MUG A; 2DP6 A; 2EUG A; 2OWQ A; 4LYL A; 4WRW A; 3WDG A; 1UDG A; 4WRX A; 1UI1 A; 1FLZ A; 4WPL A; 4WS3 A; 2OYT A; 4YIG A; 4ZBZ A; 2BOO A; 3TR7 A; 4WS8 A; 1OKB A; 5JX0 A; 5JX3 A; 3FCI A; 3IKB A; 2C56 A; 5AYS A; 4QCB A; 5JKR A; 5FF8 A; 2J8X A; 4JGC A; 3FCK B; 3WDF A; 4WRV A; 1EMJ A; 4YGM A; 1EUI A; 4WRY A; 5EUG A; 4LZB A; 3FCL A; 1UGH E; 4FNC A; 2ZHX A; 3TKB A; 1MWJ A; 2UUG A; 3A7N A; 3EUG A; 2JHQ A; 2DEM A; 3UOB A; 4EUG A; 5HF7 A; 4QC9 A; #chains in the Genus database with same CATH topology 5JKT A; 4ZBX A; 1EUG A; 4WS2 A; 4UQM A; 1MWI A; 4WS5 A; 1LQM A; 1L9G A; 4XEG A; 1AKZ A; 2L3F A; 1YUO A; 4ODA A; 1MTL A; 5JXY A; 4Z7Z A; 5H93 A; 4WS1 A; 5AYR A; 1Q3F A; 2D07 A; 5H98 A; 4DOF A; 3NT7 A; 1LQJ A; 3ZOR A; 1LQG A; 5T2W A; 4OD8 A; 4WS4 A; 2C2P A; 3FCF A; 1UUG A; 5H99 A; 4DOG A; 2DDG A; 4QCA A; 1UI0 A; 4WS6 A; 4WRZ A; 4IRB A; 4WS7 A; 3UFJ A; 4L5N A; 1EMH A; 4Z7B A; 4Z47 A; 4WRU A; 2RBA A; 1SSP E; 5CYS A; 4SKN E; 1OE4 A; 5JX8 A; 1OE6 A; 1LAU E; 4Z3A A; 2C53 A; 2C2Q A; 4WPK A; 1WYW A; 3ZOQ A; 5H9I A; 3UO7 A; 4WS0 A; 1VK2 A; 3CXM A; 2SSP E; 2D3Y A; 3UFM A; 1UDH A; 1UDI E; 2OXM A; 3UF7 A; 1OE5 A; 5JK7 D; 5JKS A; 2HXM A; 4ZBY A; 1MUG A; 2DP6 A; 2EUG A; 2OWQ A; 4LYL A; 4WRW A; 3WDG A; 1UDG A; 4WRX A; 1UI1 A; 1FLZ A; 4WPL A; 4WS3 A; 2OYT A; 4YIG A; 4ZBZ A; 2BOO A; 3TR7 A; 4WS8 A; 1OKB A; 5JX0 A; 5JX3 A; 3FCI A; 3IKB A; 2C56 A; 5AYS A; 4QCB A; 5JKR A; 5FF8 A; 2J8X A; 4JGC A; 3FCK B; 3WDF A; 4WRV A; 1EMJ A; 4YGM A; 1EUI A; 4WRY A; 5EUG A; 4LZB A; 3FCL A; 1UGH E; 4FNC A; 2ZHX A; 3TKB A; 1MWJ A; 2UUG A; 3A7N A; 3EUG A; 2JHQ A; 2DEM A; 3UOB A; 4EUG A; 5HF7 A; 4QC9 A; #chains in the Genus database with same CATH homology 5JKT A; 4ZBX A; 1EUG A; 4WS2 A; 4UQM A; 1MWI A; 4WS5 A; 1LQM A; 1L9G A; 4XEG A; 1AKZ A; 2L3F A; 1YUO A; 4ODA A; 1MTL A; 5JXY A; 4Z7Z A; 5H93 A; 4WS1 A; 5AYR A; 1Q3F A; 2D07 A; 5H98 A; 4DOF A; 3NT7 A; 1LQJ A; 3ZOR A; 1LQG A; 5T2W A; 4OD8 A; 4WS4 A; 2C2P A; 3FCF A; 1UUG A; 5H99 A; 4DOG A; 2DDG A; 4QCA A; 1UI0 A; 4WS6 A; 4WRZ A; 4IRB A; 4WS7 A; 3UFJ A; 4L5N A; 1EMH A; 4Z7B A; 4Z47 A; 4WRU A; 2RBA A; 1SSP E; 5CYS A; 4SKN E; 1OE4 A; 5JX8 A; 1OE6 A; 1LAU E; 4Z3A A; 2C53 A; 2C2Q A; 4WPK A; 1WYW A; 3ZOQ A; 5H9I A; 3UO7 A; 4WS0 A; 1VK2 A; 3CXM A; 2SSP E; 2D3Y A; 3UFM A; 1UDH A; 1UDI E; 2OXM A; 3UF7 A; 1OE5 A; 5JK7 D; 5JKS A; 2HXM A; 4ZBY A; 1MUG A; 2DP6 A; 2EUG A; 2OWQ A; 4LYL A; 4WRW A; 3WDG A; 1UDG A; 4WRX A; 1UI1 A; 1FLZ A; 4WPL A; 4WS3 A; 2OYT A; 4YIG A; 4ZBZ A; 2BOO A; 3TR7 A; 4WS8 A; 1OKB A; 5JX0 A; 5JX3 A; 3FCI A; 3IKB A; 2C56 A; 5AYS A; 4QCB A; 5JKR A; 5FF8 A; 2J8X A; 4JGC A; 3FCK B; 3WDF A; 4WRV A; 1EMJ A; 4YGM A; 1EUI A; 4WRY A; 5EUG A; 4LZB A; 3FCL A; 1UGH E; 4FNC A; 2ZHX A; 3TKB A; 1MWJ A; 2UUG A; 3A7N A; 3EUG A; 2JHQ A; 2DEM A; 3UOB A; 4EUG A; 5HF7 A; 4QC9 A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
