The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
4
|
sequence length |
44
|
structure length |
44
|
Chain Sequence |
GIINTLQKYYCRVRGAICHPVFCPRRYKQIGTCGLPGTKCCKKP
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Identification of structural traits that increase the antimicrobial activity of a chimeric peptide of human beta-defensins 2 and 3.
pubmed doi rcsb |
| molecule tags |
Antimicrobial protein, de novo protein
|
| molecule keywords |
Chimeric Peptide
|
| total genus |
4
|
| structure length |
44
|
| sequence length |
44
|
| ec nomenclature | |
| pdb deposition date | 2012-08-30 |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | Roll | Antimicrobial Peptide, Beta-defensin 2; Chain A | Antimicrobial Peptide, Beta-defensin 2; Chain A |
#chains in the Genus database with same CATH superfamily 1FQQ A; 2LXO A; 1FD3 A; 2LWL A; 1KJ6 A; 1FD4 A; #chains in the Genus database with same CATH topology 3MHD D; 1FQQ A; 2UWI A; 2LXO A; 1FD3 A; 2LWL A; 2MJK A; 1KJ6 A; 3QD6 R; 4E4D R; 3MI8 D; 1FD4 A; #chains in the Genus database with same CATH homology 3MHD D; 1FQQ A; 2UWI A; 2LXO A; 1FD3 A; 2LWL A; 2MJK A; 1KJ6 A; 3QD6 R; 4E4D R; 3MI8 D; 1FD4 A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
