The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
46
|
sequence length |
130
|
structure length |
130
|
Chain Sequence |
YVEPKFLNKAFEVALKVQIIAGFDRGLVKWLRVHGRTLSTVQKKALYFVNRRYMQTHWANYMLWINKKIDALGRTPVVGDYTRLGAEIGRRIDMAYFYDFLKDKNMIPKYLPYMEEINRMRPADVPVKYM
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
1.35 and 2.07 A resolution structures of the red abalone sperm lysin monomer and dimer reveal features involved in receptor binding.
pubmed doi rcsb |
| molecule keywords |
SPERM LYSIN
|
| molecule tags |
Cell adhesion
|
| total genus |
46
|
| structure length |
130
|
| sequence length |
130
|
| chains with identical sequence |
B, C, D
|
| ec nomenclature | |
| pdb deposition date | 1999-04-19 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF01303 | Egg_lysin | Egg lysin (Sperm-lysin) |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Up-down Bundle | Lysin | Fertilization protein |
#chains in the Genus database with same CATH superfamily 3LYN A; 1GAK A; 1LIS A; 1LYN A; 2LIS A; 2LYN A; #chains in the Genus database with same CATH topology 4TSF A; 1GAK A; 1E1R A; 4ASU A; 1MAB A; 3OEH A; 2WPD A; 1H8E A; 2JJ2 A; 2W6J A; 2JDI A; 2QE7 A; 4YXW A; 2F43 A; 1BMF A; 1KMH A; 1EFR A; 1LYN A; 4XD7 A; 2HLD A; 1H8H A; 4Z1M A; 5CDF A; 2LYN A; 2XOK A; 3LYN A; 2CK3 A; 3FKS A; 2WSS A; 1E79 A; 1SKY B; 1W0J A; 2XND A; 2W6I A; 2LIS A; 1OHH A; 1W0K A; 2JJ1 A; 3CMN A; 1NBM A; 3OEE A; 5FL7 A; 1E1Q A; 3OE7 A; 2JIZ A; 2V7Q A; 3ZIA A; 1LIS A; 3OFN A; 3OAA A; 1COW A; 4TT3 A; 5DN6 A; 2R9V A; 1FX0 A; #chains in the Genus database with same CATH homology 3LYN A; 1GAK A; 1LIS A; 1LYN A; 2LIS A; 2LYN A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
