2VNL | Genus

Total Genus 35

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	35
sequence length	147
structure length	147
Chain Sequence	TANVVVSNPRPIFTESRSFKAVANGKIYIGQIDTDPVNPANQIPVYIENEDGSHVQITQPLIINAAGKIVYNGQLVKIVTVQGHSMAIYDANGSQVDYIANVLKWDPDQYSIEADKKFKQIEDKIEEILSKIYHIENEIARIKKLIG

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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reading 147 atoms

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147 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Viral protein
source organism	Enterobacteria phage p22
publication title	Bacteriophage P22 Tailspike: Structure of the Complete Protein and Function of the Interdomain Linker pubmed doi rcsb
molecule keywords	BIFUNCTIONAL TAIL PROTEIN, PIIGCN4
total genus	35
structure length	147
sequence length	147
ec nomenclature
pdb deposition date	2008-02-05

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.170.14.10	Mainly Beta	Beta Complex	Tailspike Protein; Chain	Phage P22 tailspike-like, N-terminal domain	2vnlA01

2VKYB 1LKTA 2XC1A 2VNLA
chains in the Genus database with same CATH superfamily

2VKYB 1LKTA 2XC1A 2VNLA
chains in the Genus database with same CATH topology

2VKYB 1LKTA 2XC1A 2VNLA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 2VKY B;  1LKT A;  2XC1 A;  2VNL A; 
#chains in the Genus database with same CATH topology
 2VKY B;  1LKT A;  2XC1 A;  2VNL A; 
#chains in the Genus database with same CATH homology
 2VKY B;  1LKT A;  2XC1 A;  2VNL A;

...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)

...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

2VNLA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN