2XC1A

Full-length tailspike protein mutant y108w of bacteriophage p22
Total Genus 218
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
218
sequence length
660
structure length
660
Chain Sequence
VVVSNPRPIFTESRSFKAVANGKIYIGQIDTDPVNPANQIPVYIENEDGSHVQITQPLIINAAGKIVYNGQLVKIVTVQGHSMAIYDANGSQVDYIANVLKWDPDQYSIEADKKFKYSVKLSDYPTLQDAASAAVDGLLIDRDYNFYGGETVDFGGKVLTIECKAKFIGDGNLIFTKLGKGSRIAGVFMESTTTPWVIKPWTDDNQWLTDAAAVVATLKQSKTDGYQPTVSDYVKFPGIETLLPPNAKGQNITSTLEIRECIGVEVHRASGLMAGFLFRGCHFCKMVDANNPSGGKDGIITFENLSGDWGKGNYVIGGRTSYGSVSSAQFLRNNGGFERDGGVIGFTSYRAGESGVKTWQGTVGSTTSRNYNLQFRDSVVIYPVWDGFDLGADTDMNPELDRPGDYPITQYPLHQLPLNHLIDNLLVRGALGVGFGMDGKGMYVSNITVEDCAGSGAYLLTHESVFTNIAIIDTNTKDFQANQIYISGACRVNGLRLIGIRSTDGQSLTIDAPNSTVSGITGMVDPSRINVANLAEEGLGNIRANSFGYDSAAIKLRIHKLSKTLDSGALYSHINGGAGSGSAYTQLTAISGSTPDAVSLKVNHKDCRGAEIPFVPDIASDDFIKDSSCFLPYWENNSTSLKALVKKPNGELVRLTLATL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Bacteriophage P22 Tailspike: Structure of the Complete Protein and Function of the Interdomain Linker
pubmed doi rcsb
source organism Enterobacteria phage p22
molecule tags Hydrolase
molecule keywords BIFUNCTIONAL TAIL PROTEIN
total genus 218
structure length 660
sequence length 660
chains with identical sequence B, C
ec nomenclature ec 3.2.1.-:
pdb deposition date 2010-04-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF09251 PhageP22-tail Salmonella phage P22 tail-spike
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.20 Mainly Beta 3 Solenoid Pectate Lyase C-like Pectate Lyase C-like 2xc1A02
2.170.14.10 Mainly Beta Beta Complex Tailspike Protein; Chain Phage P22 tailspike-like, N-terminal domain 2xc1A01
3H09A 1TSPA 2VFMA 2VKYB 1CLWA 1QA3A 2XC1A 1TYUA 4OM9A 2VFNA 3RIQA 1QA2A 1TYWA 1LKTA 3SZEA 1TYXA 3ML3A 2VFOA 1TYVA 2IOUG 2VNLA 2VFQA 3SYJA 1DABA 1QRCA 1WXRA 1QA1A 4KH3A 2VFPA 1QQ1A 3TH0A 2V5IA 1QRBA 3AK5A
chains in the Genus database with same CATH superfamily
2PYGA 1DBGA 2VFMA 3JX8A 3PETA 1CLWA 4XL9A 5C1CA 5AMVA 3VMVA 1WMRA 4XM3A 3SUCA 1OFLA 1HG8A 1H80A 1OGOX 4PMHA 2NZMA 2VFNA 2XTXA 4OM9A 1K8FA 4XOTA 2BX6A 1QA2A 2Z8GA 1O8IA 4XLFA 3PSSA 4YZQA 4XLAA 3VSVA 5C1EA 1TYWA 4Z05A 1OFEA 3SZEA 3ML3A 4YZXA 2VFOA 1O8EA 2W7ZA 2VFQA 2O17A 3SYJA 1O8GA 4YZ0A 2VBEA 1EZGA 1QRCA 4XR6A 3ZSCA 4OZZA 4OJ6A 1KQ5A 1LLWA 2X6YA 2QZAA 3VSTA 2IQ7A 2V5IA 4U4BA 2NTPA 4OZYA 3B90A 2XT4A 3LJYA 1K4ZA 3H09A 1VBLA 1KTWA 1O8KA 2BM7A 2X6XA 4YEJA 2INVA 2XTWA 1JRGA 4YDTA 4XOPA 4XLCA 1RMGA 2NTQA 3RIQA 2BM4A 4OJ5A 2NT9A 4XMYA 1IB4A 2NSTA 4NK8A 2O1DA 1IA5A 2G0YA 2J8KA 4AVZA 4XKWA 4XLEA 4MXNA 1LLZA 4W8TA 4XN3A 1TYVA 3KRGA 1O8MA 2B0RA 2QXZA 3B8YA 1OOCA 2NTBA 1EE6A 3SY2A 1WXRA 5DNSA 1QA1A 3N90A 1HF2A 1O8FA 2VFPA 2NT6A 5JLVC 1KCDA 1JTAA 3GQ8A 4YC5A 4OPWA 4YFOA 4W8SA 4XONA 5JMCB 2X3HA 2BM6A 3AK5A 4W8QA 4W8RA 1TSPA 3SQVA 4C2LA 1QA3A 1PE9A 4URRA 3LMWA 4YEIA 1O8DA 1DBOA 4U49A 4XKVA 1PXZA 3WWGA 1PLUA 3GRHA 1X0CA 3ZPPA 1LKTA 2O0WA 1NHCA 4NK6A 4XLHA 2VJJA 1XG2A 4YCQA 4OJPA 3N6ZA 2IOUG 3FY3A 1RU4A 2QYUA 2VNLA 4Z03A 2X85A 2INUA 2NSPA 2X6WA 4XQFA 2UVFA 1DABA 1QJVA 3DU1X 3PSZA 1RWRA 1LM1A 2XTYA 3VSUA 2BSPA 2QY1A 3NB2A 2YUHA 4EW9A 3B4NA 3TH0A 1QCXA 2VBMA 1EA0A 2VKYB 3GQAA 2O04A 1GQ8A 2J8IA 1KCCA 4Z06A 2BM5A 2PECA 1TYUA 2XC1A 3GQ9A 1AIRA 3JURA 3P4GA 4V02C 2UVEA 2VJIA 1OGMX 3VMWA 2PYHA 4I84A 4XORA 4OJLA 2XT2A 3LYCA 4XNFA 1BN8A 1TYXA 1O8LA 1O8HA 4OJOA 3T9GA 3EQNA 1K5CA 1O88A 1IDJA 1O8JA 4HWVA 3GQ7A 4JRAC 1CZFA 2ODLA 2O0VA 1L1IA 1BHEA 1OFMA 3BH7B 4XN0A 4YZAA 1OFDA 4KH3A 3UW0A 1IDKA 2QX3A 3EQOA 1QQ1A 2EWEA 2VBKA 3BH6B 4MR0A 2F3LA 1QRBA 4YELA 3NAWA 2O6WA
chains in the Genus database with same CATH topology
1K4ZA 3H09A 2J8IA 1TSPA 2VFMA 3JX8A 1CLWA 3PETA 2BM7A 2VKYB 4OPWA 1QA3A 2BM5A 1TYUA 2XC1A 3P4GA 4V02C 4OM9A 2VFNA 3RIQA 2BM4A 4OJ5A 1K8FA 2BX6A 4OJLA 3LJYA 1QA2A 3LYCA 1TYWA 1LKTA 2G0YA 2V5IA 3SZEA 1TYXA 3ML3A 4OJOA 2VFOA 4OJPA 1TYVA 2W7ZA 3N6ZA 2IOUG 2VNLA 2B0RA 4JRAC 2VFQA 3SYJA 1DABA 1QRCA 1WXRA 3BH7B 1QA1A 3N90A 4OJ6A 1KQ5A 1HF2A 4KH3A 2VFPA 5JLVC 5JMCB 1QQ1A 3BH6B 2YUHA 3TH0A 2F3LA 1QRBA 3AK5A 2BM6A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3H09 A;  1TSP A;  2VFM A;  2VKY B;  1CLW A;  1QA3 A;  2XC1 A;  1TYU A;  4OM9 A;  2VFN A;  3RIQ A;  1QA2 A;  1TYW A;  1LKT A;  3SZE A;  1TYX A;  3ML3 A;  2VFO A;  1TYV A;  2IOU G;  2VNL A;  2VFQ A;  3SYJ A;  1DAB A;  1QRC A;  1WXR A;  1QA1 A;  4KH3 A;  2VFP A;  1QQ1 A;  3TH0 A;  2V5I A;  1QRB A;  3AK5 A; 
#chains in the Genus database with same CATH topology
 2PYG A;  1DBG A;  2VFM A;  3JX8 A;  3PET A;  1CLW A;  4XL9 A;  5C1C A;  5AMV A;  3VMV A;  1WMR A;  4XM3 A;  3SUC A;  1OFL A;  1HG8 A;  1H80 A;  1OGO X;  4PMH A;  2NZM A;  2VFN A;  2XTX A;  4OM9 A;  1K8F A;  4XOT A;  2BX6 A;  1QA2 A;  2Z8G A;  1O8I A;  4XLF A;  3PSS A;  4YZQ A;  4XLA A;  3VSV A;  5C1E A;  1TYW A;  4Z05 A;  1OFE A;  3SZE A;  3ML3 A;  4YZX A;  2VFO A;  1O8E A;  2W7Z A;  2VFQ A;  2O17 A;  3SYJ A;  1O8G A;  4YZ0 A;  2VBE A;  1EZG A;  1QRC A;  4XR6 A;  3ZSC A;  4OZZ A;  4OJ6 A;  1KQ5 A;  1LLW A;  2X6Y A;  2QZA A;  3VST A;  2IQ7 A;  2V5I A;  4U4B A;  2NTP A;  4OZY A;  3B90 A;  2XT4 A;  3LJY A;  1K4Z A;  3H09 A;  1VBL A;  1KTW A;  1O8K A;  2BM7 A;  2X6X A;  4YEJ A;  2INV A;  2XTW A;  1JRG A;  4YDT A;  4XOP A;  4XLC A;  1RMG A;  2NTQ A;  3RIQ A;  2BM4 A;  4OJ5 A;  2NT9 A;  4XMY A;  1IB4 A;  2NST A;  4NK8 A;  2O1D A;  1IA5 A;  2G0Y A;  2J8K A;  4AVZ A;  4XKW A;  4XLE A;  4MXN A;  1LLZ A;  4W8T A;  4XN3 A;  1TYV A;  3KRG A;  1O8M A;  2B0R A;  2QXZ A;  3B8Y A;  1OOC A;  2NTB A;  1EE6 A;  3SY2 A;  1WXR A;  5DNS A;  1QA1 A;  3N90 A;  1HF2 A;  1O8F A;  2VFP A;  2NT6 A;  5JLV C;  1KCD A;  1JTA A;  3GQ8 A;  4YC5 A;  4OPW A;  4YFO A;  4W8S A;  4XON A;  5JMC B;  2X3H A;  2BM6 A;  3AK5 A;  4W8Q A;  4W8R A;  1TSP A;  3SQV A;  4C2L A;  1QA3 A;  1PE9 A;  4URR A;  3LMW A;  4YEI A;  1O8D A;  1DBO A;  4U49 A;  4XKV A;  1PXZ A;  3WWG A;  1PLU A;  3GRH A;  1X0C A;  3ZPP A;  1LKT A;  2O0W A;  1NHC A;  4NK6 A;  4XLH A;  2VJJ A;  1XG2 A;  4YCQ A;  4OJP A;  3N6Z A;  2IOU G;  3FY3 A;  1RU4 A;  2QYU A;  2VNL A;  4Z03 A;  2X85 A;  2INU A;  2NSP A;  2X6W A;  4XQF A;  2UVF A;  1DAB A;  1QJV A;  3DU1 X;  3PSZ A;  1RWR A;  1LM1 A;  2XTY A;  3VSU A;  2BSP A;  2QY1 A;  3NB2 A;  2YUH A;  4EW9 A;  3B4N A;  3TH0 A;  1QCX A;  2VBM A;  1EA0 A;  2VKY B;  3GQA A;  2O04 A;  1GQ8 A;  2J8I A;  1KCC A;  4Z06 A;  2BM5 A;  2PEC A;  1TYU A;  2XC1 A;  3GQ9 A;  1AIR A;  3JUR A;  3P4G A;  4V02 C;  2UVE A;  2VJI A;  1OGM X;  3VMW A;  2PYH A;  4I84 A;  4XOR A;  4OJL A;  2XT2 A;  3LYC A;  4XNF A;  1BN8 A;  1TYX A;  1O8L A;  1O8H A;  4OJO A;  3T9G A;  3EQN A;  1K5C A;  1O88 A;  1IDJ A;  1O8J A;  4HWV A;  3GQ7 A;  4JRA C;  1CZF A;  2ODL A;  2O0V A;  1L1I A;  1BHE A;  1OFM A;  3BH7 B;  4XN0 A;  4YZA A;  1OFD A;  4KH3 A;  3UW0 A;  1IDK A;  2QX3 A;  3EQO A;  1QQ1 A;  2EWE A;  2VBK A;  3BH6 B;  4MR0 A;  2F3L A;  1QRB A;  4YEL A;  3NAW A;  2O6W A; 
#chains in the Genus database with same CATH homology
 1K4Z A;  3H09 A;  2J8I A;  1TSP A;  2VFM A;  3JX8 A;  1CLW A;  3PET A;  2BM7 A;  2VKY B;  4OPW A;  1QA3 A;  2BM5 A;  1TYU A;  2XC1 A;  3P4G A;  4V02 C;  4OM9 A;  2VFN A;  3RIQ A;  2BM4 A;  4OJ5 A;  1K8F A;  2BX6 A;  4OJL A;  3LJY A;  1QA2 A;  3LYC A;  1TYW A;  1LKT A;  2G0Y A;  2V5I A;  3SZE A;  1TYX A;  3ML3 A;  4OJO A;  2VFO A;  4OJP A;  1TYV A;  2W7Z A;  3N6Z A;  2IOU G;  2VNL A;  2B0R A;  4JRA C;  2VFQ A;  3SYJ A;  1DAB A;  1QRC A;  1WXR A;  3BH7 B;  1QA1 A;  3N90 A;  4OJ6 A;  1KQ5 A;  1HF2 A;  4KH3 A;  2VFP A;  5JLV C;  5JMC B;  1QQ1 A;  3BH6 B;  2YUH A;  3TH0 A;  2F3L A;  1QRB A;  3AK5 A;  2BM6 A; 
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similar chains in the pdb database (?% sequence similarity)

 
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