3F42A

Crystal structure of uncharacterized protein hp0035 from helicobacter pylori
Total Genus 28
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
28
sequence length
93
structure length
93
Chain Sequence
HMDFSQLGGLLDGMKKEFSQLEEKNKDTIHTSKSGGGMVSVSFNGLGELVDLQIDDSLLEDKEAMQIYLMSALNDGYKAVEENRKNLAFNMLG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of uncharacterized protein HP0035 from Helicobacter pylori
rcsb
molecule tags Structural genomics, unknown function
source organism Helicobacter pylori
molecule keywords protein HP0035
total genus 28
structure length 93
sequence length 93
chains with identical sequence B
ec nomenclature
pdb deposition date 2008-10-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02575 YbaB_DNA_bd YbaB/EbfC DNA-binding family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1310.10 Alpha Beta 2-Layer Sandwich Ybab; Chain: A; Nucleoid-associated protein YbaB-like domain 3f42A00
3F42A 1J8BA 1PUGA 1YBXA
chains in the Genus database with same CATH superfamily
3F42A 1J8BA 1WD5A 1PUGA 1YBXA 3FEWX 2D46A
chains in the Genus database with same CATH topology
3F42A 1J8BA 1PUGA 1YBXA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3F42 A;  1J8B A;  1PUG A;  1YBX A; 
#chains in the Genus database with same CATH topology
 3F42 A;  1J8B A;  1WD5 A;  1PUG A;  1YBX A;  3FEW X;  2D46 A; 
#chains in the Genus database with same CATH homology
 3F42 A;  1J8B A;  1PUG A;  1YBX A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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