3FGR | Genus

Total Genus 112

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	112
sequence length	343
structure length	343
Chain Sequence	SALIKLLPGGHDLLVAHNTWNSYQNMLRIIKKYRLQFREGPQEEYPLVAGNNLVFSSYPGTIFSGDDFYILGSGLVTLETTIGNKNPALWKYVQPQGCVLEWIRNVVANRLALDGATWADVFKRFNSGTYNNQWMIVDYKAFLPNGPSPGSRVLTILEQIPGMVVVADKTAELYKTTYWASYNIPYFETVFNASGLQALVAQYGDWFSYTKNPRAKIFQRDQSLVEDMDAMVRLMRYNDFLHDPLSLCEACNPKPNAENAISARSDLNPANGSYPFQALHQRAHGGIDVKVTSFTLAKYMSMLAASGPTWDQCPPFQWSKSPFHSMLHMGQPDLWMFSPIRVP

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 343 atoms

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343 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

publication title	Initial insight into the function of the lysosomal 66.3 kDa protein from mouse by means of X-ray crystallography pubmed doi rcsb
molecule keywords	Putative phospholipase B-like 2 28 kDa form
molecule tags	Hydrolase
source organism	Mus musculus
total genus	112
structure length	343
sequence length	343
ec nomenclature	ec 3.1.1.-:
pdb deposition date	2008-12-08

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.60.60.20	Alpha Beta	4-Layer Sandwich	Penicillin V Acylase; Chain A	Penicillin V Acylase; Chain A	3fgrB00

3FGTB 3FGRB 4BWCB
chains in the Genus database with same CATH superfamily

2HEZA 2Z71A 2X1CA 3MJIA 2PVAA 4WL2A 4WL3A 2X1EA 3FGRB 3HBCA 2IWMA 2BJGA 4BWCB 2OQCA 2RG2A 5HKEA 2HF0A 3FGWA 2BJFA 3PVAA 3GVZA 2QUYA 2RF8A 3FBXA 2X1DA 2RLCA 3FGTB
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 3FGT B;  3FGR B;  4BWC B; 
#chains in the Genus database with same CATH topology
 2HEZ A;  2Z71 A;  2X1C A;  3MJI A;  2PVA A;  4WL2 A;  4WL3 A;  2X1E A;  3FGR B;  3HBC A;  2IWM A;  2BJG A;  4BWC B;  2OQC A;  2RG2 A;  5HKE A;  2HF0 A;  3FGW A;  2BJF A;  3PVA A;  3GVZ A;  2QUY A;  2RF8 A;  3FBX A;  2X1D A;  2RLC A;  3FGT B; 
#chains in the Genus database with same CATH homology
 2HEZ A;  2Z71 A;  2X1C A;  3MJI A;  2PVA A;  4WL2 A;  4WL3 A;  2X1E A;  3FGR B;  3HBC A;  2IWM A;  2BJG A;  4BWC B;  2OQC A;  2RG2 A;  5HKE A;  2HF0 A;  3FGW A;  2BJF A;  3PVA A;  3GVZ A;  2QUY A;  2RF8 A;  3FBX A;  2X1D A;  2RLC A;  3FGT B;

...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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3FGRB

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN