The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
32
|
sequence length |
97
|
structure length |
97
|
Chain Sequence |
GGYMLGSAMSRPLIHFGNDYEDRYYRENMYRYPNQVYYRPVDQYSNQNSFVHDCVNITVKQHTVTTTTKGENFTETDIKIMERVVEQMCITQYQQES
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule tags |
Membrane protein
|
| molecule keywords |
Rabbit PrP
|
| publication title |
Prion disease susceptibility is affected by beta-structure folding propensity and local side-chain interactions in PrP.
pubmed doi rcsb |
| source organism |
Oryctolagus cuniculus
|
| total genus |
32
|
| structure length |
97
|
| sequence length |
97
|
| chains with identical sequence |
B
|
| ec nomenclature | |
| pdb deposition date | 2010-07-30 |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Orthogonal Bundle | Major Prion Protein | Prion/Doppel protein, beta-ribbon domain |
#chains in the Genus database with same CATH superfamily 1UW3 A; 1XYW A; 4DGI A; 2KU6 A; 1DWZ A; 2JOM A; 2L1D A; 1XYJ A; 2K5O A; 2L39 A; 2LH8 A; 1Y15 A; 1QLZ A; 3HJ5 A; 1DX0 A; 1XYQ A; 1E1P A; 1E1W A; 2KFO A; 1QM3 A; 1DWY A; 1LG4 A; 1AG2 A; 3HAK A; 3HJX A; 1B10 A; 1I4M A; 1Y2S A; 1XYX A; 2W9E A; 2KTM A; 2K56 A; 1TQB A; 1QM1 A; 1XYU A; 3O79 A; 2LEJ A; 1XU0 A; 3HES A; 1FKC A; 1QLX A; 1H0L A; 2L1K A; 2JOH A; 1E1S A; 2LSB A; 1E1J A; 1I17 A; 2L40 A; 1TPX A; 2MV8 A; 1U3M A; 2LFT A; 3HEQ A; 1FO7 A; 2L1E A; 1XYK A; 1DX1 A; 1QM0 A; 2KFM A; 2L1H A; 1Y16 A; 1E1G A; 1HJN A; 1U5L A; 1E1U A; 2KU5 A; 2KUN A; 3HER A; 2K1D A; 1HJM A; 1QM2 A; 2KU4 A; 2KFL A; 2FJ3 A; 3HAF A; 1TQC A; #chains in the Genus database with same CATH topology 1UW3 A; 1XYW A; 4DGI A; 2KU6 A; 1DWZ A; 2JOM A; 2L1D A; 1XYJ A; 2K5O A; 2L39 A; 2LH8 A; 1Y15 A; 1QLZ A; 2MDZ A; 3HJ5 A; 1DX0 A; 1XYQ A; 1E1P A; 1E1W A; 2KFO A; 1QM3 A; 1DWY A; 2KZC A; 1LG4 A; 1AG2 A; 3HAK A; 3HJX A; 1B10 A; 1I4M A; 1Y2S A; 1XYX A; 2W9E A; 2KTM A; 2K56 A; 1TQB A; 2LL0 A; 1QM1 A; 1XYU A; 3O79 A; 2LEJ A; 1XU0 A; 3HES A; 1FKC A; 1QLX A; 1H0L A; 2L1K A; 2JOH A; 1E1S A; 2LSB A; 1E1J A; 1I17 A; 2L40 A; 1TPX A; 2MV8 A; 1U3M A; 2LFT A; 3HEQ A; 1FO7 A; 2L1E A; 1XYK A; 1DX1 A; 1QM0 A; 2KFM A; 2L1H A; 1Y16 A; 1E1G A; 1HJN A; 1U5L A; 1E1U A; 2KU5 A; 2KUN A; 3HER A; 2K1D A; 1HJM A; 1QM2 A; 2KU4 A; 2KFL A; 2FJ3 A; 3HAF A; 1TQC A; #chains in the Genus database with same CATH homology 1UW3 A; 1XYW A; 4DGI A; 2KU6 A; 1DWZ A; 2JOM A; 2L1D A; 1XYJ A; 2K5O A; 2L39 A; 2LH8 A; 1Y15 A; 1QLZ A; 3HJ5 A; 1DX0 A; 1XYQ A; 1E1P A; 1E1W A; 2KFO A; 1QM3 A; 1DWY A; 1LG4 A; 1AG2 A; 3HAK A; 3HJX A; 1B10 A; 1I4M A; 1Y2S A; 1XYX A; 2W9E A; 2KTM A; 2K56 A; 1TQB A; 1QM1 A; 1XYU A; 3O79 A; 2LEJ A; 1XU0 A; 3HES A; 1FKC A; 1QLX A; 1H0L A; 2L1K A; 2JOH A; 1E1S A; 2LSB A; 1E1J A; 1I17 A; 2L40 A; 1TPX A; 2MV8 A; 1U3M A; 2LFT A; 3HEQ A; 1FO7 A; 2L1E A; 1XYK A; 1DX1 A; 1QM0 A; 2KFM A; 2L1H A; 1Y16 A; 1E1G A; 1HJN A; 1U5L A; 1E1U A; 2KU5 A; 2KUN A; 3HER A; 2K1D A; 1HJM A; 1QM2 A; 2KU4 A; 2KFL A; 2FJ3 A; 3HAF A; 1TQC A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
