The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
79
|
sequence length |
396
|
structure length |
295
|
Chain Sequence |
SRNANDGISIAQTTEGALNEINNNLQRVRELSVQATNGTNSDSDLKSIQDEIQQRLEEIDRVSNQTQFNGVKVLSQDNQMKIQVGANDGETITIDLQKIDVKSLGLDGFNVNGPKEATVGDLKSSFKNVTGYDTYAAGADKYRVDINSGAVVTDAVAPDKVYVNAANGQLTTDDAENNTKTKNESAKLSDLEANNAVKGESKITVNGAEYTANATGDKITLAGKTMFIDKTASGVSTLINEDAAAAKKSTANPLASIDSALSKVDAVRSSLGAIQNRFDSAITNLGNTVTNLNSA
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule tags |
Immune system
|
| molecule keywords |
Toll-like receptor 5b and variable lymphocyte receptor B.61
|
| publication title |
Structural basis of TLR5-flagellin recognition and signaling.
pubmed doi rcsb |
| source organism |
Danio rerio
|
| total genus |
79
|
| structure length |
295
|
| sequence length |
396
|
| chains with identical sequence |
D
|
| ec nomenclature | |
| pdb deposition date | 2011-12-14 |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Up-down Bundle | f41 fragment of flagellin, N-terminal domain | f41 fragment of flagellin, N-terminal domain |
#chains in the Genus database with same CATH superfamily 1UCU A; 2ZBI A; 5KAY A; 4CFI A; 2D4X A; 4NX9 A; 3K8W A; 3V47 C; 3A5X A; 1IO1 A; 3K8V A; 3PWX A; #chains in the Genus database with same CATH topology 1UCU A; 2ZBI A; 5KAY A; 4CFI A; 2D4X A; 4NX9 A; 3K8W A; 3V47 C; 3A5X A; 1IO1 A; 3K8V A; 3PWX A; #chains in the Genus database with same CATH homology 1UCU A; 2ZBI A; 5KAY A; 4CFI A; 2D4X A; 4NX9 A; 3K8W A; 3V47 C; 3A5X A; 1IO1 A; 3K8V A; 3PWX A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
