3CC2X

The refined crystal structure of the haloarcula marismortui large ribosomal subunit at 2.4 angstrom resolution with rrna sequence for the 23s rrna and genome-derived sequences for r-proteins
Total Genus 20

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
20
sequence length
82
structure length
82
Chain Sequence
ERVVTIPLRDARAEPNHKRADKAMILIREHLAKHFSVDEDAVRLDPSINEAAWARGRANTPSKIRVRAARFEEEGEAIVEAE

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
EMPTYTI2 (62-65)S1 (8-13)TI1 (59-62)3H1 (15-19)AH2 (52-59)3H2 (22-24)AH1 (25-41)S3 (69-77)3H3 (45-47)TI3 (78-81)S2 (48-50)Updating...
connected with : NaN
molecule tags Ribosome
publication title Mutations outside the anisomycin-binding site can make ribosomes drug-resistant.
pubmed doi rcsb
molecule keywords 50S ribosomal protein L2P
total genus 20
structure length 82
sequence length 82
ec nomenclature
pdb deposition date 2008-02-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
X PF01198 Ribosomal_L31e Ribosomal protein L31e
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.440.10 Alpha Beta Roll Ribosomal Protein L31e; Chain: W; Ribosomal Protein L31e; Chain: W; 3cc2X00
3CCVX 1VQLX 1KD1Y 3CCEX 3CCSX 1KQSW 1M90Y 3CPWW 1YJWX 1S72X 1VQKX 3CC4X 3CD6X 3CCMX 1NJIY 1Q86Y 1VQ6X 2OTJX 3CMEX 1VQOX 3CCUX 3G71X 3CCRX 1VQ7X 1VQ9X 1YIJX 2QEXX 3CC2X 1YITX 1K73Y 3G4SX 1Q82Y 1K9MY 3CC7X 1VQMX 1VQNX 1YI2X 1VQ5X 1VQ8X 1W2BW 1N8RY 3I56X 3G6EX 2QA4X 1Q81Y 1YJNX 3OW2W 1QVFW 1YHQX 3CMAX 3CCQX 1Q7YY 3I55X 3CXCW 1VQPX 1K8AY 1JJ2W 2OTLX 1QVGW 1VQ4X 3CCJX 1M1KY 1KC8Y 3CCLX 1YJ9X
chains in the Genus database with same CATH superfamily
3CCVX 1VQLX 1KD1Y 3CCEX 3CCSX 1KQSW 1M90Y 3CPWW 1YJWX 1S72X 1VQKX 3CC4X 3CD6X 3CCMX 1NJIY 1Q86Y 1VQ6X 2OTJX 3CMEX 1VQOX 3CCUX 3G71X 3CCRX 1VQ7X 1VQ9X 1YIJX 2QEXX 3CC2X 1YITX 1K73Y 3G4SX 1Q82Y 1K9MY 3CC7X 1VQMX 1VQNX 1YI2X 1VQ5X 1VQ8X 1W2BW 1N8RY 3I56X 3G6EX 2QA4X 1Q81Y 1YJNX 3OW2W 1QVFW 1YHQX 3CMAX 3CCQX 1Q7YY 3I55X 3CXCW 1VQPX 1K8AY 1JJ2W 2OTLX 1QVGW 1VQ4X 3CCJX 1M1KY 1KC8Y 3CCLX 1YJ9X
chains in the Genus database with same CATH topology
3CCVX 1VQLX 1KD1Y 3CCEX 3CCSX 1KQSW 1M90Y 3CPWW 1YJWX 1S72X 1VQKX 3CC4X 3CD6X 3CCMX 1NJIY 1Q86Y 1VQ6X 2OTJX 3CMEX 1VQOX 3CCUX 3G71X 3CCRX 1VQ7X 1VQ9X 1YIJX 2QEXX 3CC2X 1YITX 1K73Y 3G4SX 1Q82Y 1K9MY 3CC7X 1VQMX 1VQNX 1YI2X 1VQ5X 1VQ8X 1W2BW 1N8RY 3I56X 3G6EX 2QA4X 1Q81Y 1YJNX 3OW2W 1QVFW 1YHQX 3CMAX 3CCQX 1Q7YY 3I55X 3CXCW 1VQPX 1K8AY 1JJ2W 2OTLX 1QVGW 1VQ4X 3CCJX 1M1KY 1KC8Y 3CCLX 1YJ9X
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 3CCV X;  1VQL X;  1KD1 Y;  3CCE X;  3CCS X;  1KQS W;  1M90 Y;  3CPW W;  1YJW X;  1S72 X;  1VQK X;  3CC4 X;  3CD6 X;  3CCM X;  1NJI Y;  1Q86 Y;  1VQ6 X;  2OTJ X;  3CME X;  1VQO X;  3CCU X;  3G71 X;  3CCR X;  1VQ7 X;  1VQ9 X;  1YIJ X;  2QEX X;  3CC2 X;  1YIT X;  1K73 Y;  3G4S X;  1Q82 Y;  1K9M Y;  3CC7 X;  1VQM X;  1VQN X;  1YI2 X;  1VQ5 X;  1VQ8 X;  1W2B W;  1N8R Y;  3I56 X;  3G6E X;  2QA4 X;  1Q81 Y;  1YJN X;  3OW2 W;  1QVF W;  1YHQ X;  3CMA X;  3CCQ X;  1Q7Y Y;  3I55 X;  3CXC W;  1VQP X;  1K8A Y;  1JJ2 W;  2OTL X;  1QVG W;  1VQ4 X;  3CCJ X;  1M1K Y;  1KC8 Y;  3CCL X;  1YJ9 X; 
#chains in the Genus database with same CATH topology
 3CCV X;  1VQL X;  1KD1 Y;  3CCE X;  3CCS X;  1KQS W;  1M90 Y;  3CPW W;  1YJW X;  1S72 X;  1VQK X;  3CC4 X;  3CD6 X;  3CCM X;  1NJI Y;  1Q86 Y;  1VQ6 X;  2OTJ X;  3CME X;  1VQO X;  3CCU X;  3G71 X;  3CCR X;  1VQ7 X;  1VQ9 X;  1YIJ X;  2QEX X;  3CC2 X;  1YIT X;  1K73 Y;  3G4S X;  1Q82 Y;  1K9M Y;  3CC7 X;  1VQM X;  1VQN X;  1YI2 X;  1VQ5 X;  1VQ8 X;  1W2B W;  1N8R Y;  3I56 X;  3G6E X;  2QA4 X;  1Q81 Y;  1YJN X;  3OW2 W;  1QVF W;  1YHQ X;  3CMA X;  3CCQ X;  1Q7Y Y;  3I55 X;  3CXC W;  1VQP X;  1K8A Y;  1JJ2 W;  2OTL X;  1QVG W;  1VQ4 X;  3CCJ X;  1M1K Y;  1KC8 Y;  3CCL X;  1YJ9 X; 
#chains in the Genus database with same CATH homology
 3CCV X;  1VQL X;  1KD1 Y;  3CCE X;  3CCS X;  1KQS W;  1M90 Y;  3CPW W;  1YJW X;  1S72 X;  1VQK X;  3CC4 X;  3CD6 X;  3CCM X;  1NJI Y;  1Q86 Y;  1VQ6 X;  2OTJ X;  3CME X;  1VQO X;  3CCU X;  3G71 X;  3CCR X;  1VQ7 X;  1VQ9 X;  1YIJ X;  2QEX X;  3CC2 X;  1YIT X;  1K73 Y;  3G4S X;  1Q82 Y;  1K9M Y;  3CC7 X;  1VQM X;  1VQN X;  1YI2 X;  1VQ5 X;  1VQ8 X;  1W2B W;  1N8R Y;  3I56 X;  3G6E X;  2QA4 X;  1Q81 Y;  1YJN X;  3OW2 W;  1QVF W;  1YHQ X;  3CMA X;  3CCQ X;  1Q7Y Y;  3I55 X;  3CXC W;  1VQP X;  1K8A Y;  1JJ2 W;  2OTL X;  1QVG W;  1VQ4 X;  3CCJ X;  1M1K Y;  1KC8 Y;  3CCL X;  1YJ9 X;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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