The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
344
|
sequence length |
786
|
structure length |
786
|
Chain Sequence |
ISKGFSTQTERINILKAQILNAKPCVESERAILITESFKQTEGQPAILRRALALKHILENIPITIRDQELIVGSLTKEPRSSQVFPEFSNKWLQDELDRLNKRTGDAFQISEESKEKLKDVFEYWNGKTTSELATSYMTEETREAVNCDVFTVGNYYYNGVGHVSVDYGKVLRVGFNGIINEAKEQLEKNRSIDPDFIKKEKFLNSVIISCEAAITYVNRYAKKAKEIADNTSDAKRKAELNEIAKICSKVSGEGAKSFYEACQLFWFIHAIINIESNGHSISPARFDQYMYPYYENDKNITDKFAQELIDCIWIKLNDINKVRDEISTKHFGGYPMYQNLIVGGQNSEGKDATNKVSYMALEAAVHVKLPQPSLSVRIWNKTPDEFLLRAAELTREGLGLPAYYNDEVIIPALVSRGLTLEDARDYGIIGCVEPQKPGKTEGWHDSAFFNLARIVELTINSGFDKNKQIGPKTQNFEEMKSFDEFMKAYKAQMEYFVKHMCCADNCIDIAHAERAPLPFLSSMVDNCIGKGKSLQDGGAEYNFSGPQGVGVANIGDSLVAVKKIVFDENKITPSELKKTLNNDFKNSEEIQALLKNAPKFGNDIDEVDNLAREGALVYCREVNKYTNPRGGNFQPGLYPSSINVYFGSLTGATPDGRKSGQPLADGVSPSRGCDVSGPTAACNSVSKLDHFIASNGTLFNQKFHPSALKGDNGLMNLSSLIRSYFDQKGFHVQFNVIDKKILLAAQKNPEKYQDLIVRVAGYSAQFISLDKSIQNDIIARTEHVM
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
When Computational Chemistry and Modern Software Get It Right; New Insight Into the Mechanism of a Glycyl Radical Enzyme
rcsb |
| molecule keywords |
B12-independent glycerol dehydratase
|
| molecule tags |
Hydrolase
|
| source organism |
Clostridium butyricum
|
| total genus |
344
|
| structure length |
786
|
| sequence length |
786
|
| chains with identical sequence |
B
|
| ec nomenclature | |
| pdb deposition date | 2013-09-19 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF01228 | Gly_radical | Glycine radical |
| A | PF02901 | PFL-like | Pyruvate formate lyase-like |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | Alpha-Beta Barrel | Anaerobic Ribonucleotide-triphosphate Reductase Large Chain | Anaerobic Ribonucleotide-triphosphate Reductase Large Chain |
#chains in the Genus database with same CATH superfamily 1XJG A; 1XJM A; 2CVX A; 1XJE A; 2EUD A; 2XAK A; 1H7B A; 2CVS A; 1XJN A; 2XAZ A; 1R9D A; 2R1R A; 2YAJ A; 1HK8 A; 6R1R A; 2X0X A; 3K8T A; 1L1L A; 2CVT A; 5CNT A; 3S8B A; 4ERM A; 1PEO A; 1CM5 A; 5R1R A; 1ZYZ A; 3PFL A; 3HNE A; 2XO4 A; 5CNU A; 2Y8N A; 1H7A A; 2XAW A; 2XAY A; 1XJK A; 1XJF A; 2CVU A; 1R1R A; 5CNS A; 3RSR A; 7R1R A; 4MTJ A; 3R1R A; 3S87 A; 2CVV A; 3HNF A; 1PEU A; 2XO5 A; 1H79 A; 2XAV A; 3HNC A; 1R8W A; 1MZO A; 2ZLG A; 2WGH A; 2BQ1 E; 1QHM A; 5CNV A; 1H18 A; 3O0N A; 1XJJ A; 1PEM A; 2HA9 A; 2XAX A; 3TBA A; 2PFL A; 2F3O A; 1H78 A; 1PEQ A; 2CVW A; 2ZLF A; 3S8C A; 1H16 A; 2CVY A; 3HND A; 3O0O A; 4X3V A; 3TB9 A; 4R1R A; 3S8A A; 1ZZD A; 1RLR A; 3O0Q A; 2XAP A; 1H17 A; #chains in the Genus database with same CATH topology 1XJG A; 1XJM A; 2CVX A; 1XJE A; 2EUD A; 2XAK A; 1H7B A; 2CVS A; 1XJN A; 2XAZ A; 1R9D A; 2R1R A; 2YAJ A; 1HK8 A; 6R1R A; 5FAY A; 5FAW A; 2X0X A; 3K8T A; 1L1L A; 5A0U A; 2CVT A; 5CNT A; 3S8B A; 4ERM A; 1PEO A; 1CM5 A; 5R1R A; 1ZYZ A; 3PFL A; 3HNE A; 2XO4 A; 5CNU A; 2Y8N A; 1H7A A; 2XAW A; 2XAY A; 1XJK A; 1XJF A; 2CVU A; 1R1R A; 5CNS A; 3RSR A; 5FAU A; 7R1R A; 4MTJ A; 3R1R A; 3S87 A; 2CVV A; 3HNF A; 1PEU A; 2XO5 A; 1H79 A; 2XAV A; 3HNC A; 1R8W A; 1MZO A; 5A0Z A; 2ZLG A; 2WGH A; 2BQ1 E; 1QHM A; 5CNV A; 1H18 A; 3O0N A; 1XJJ A; 1PEM A; 2HA9 A; 2XAX A; 3TBA A; 2PFL A; 2F3O A; 1H78 A; 1PEQ A; 2CVW A; 2ZLF A; 3S8C A; 5KDP A; 5FAV A; 1H16 A; 2CVY A; 3HND A; 3O0O A; 4X3V A; 3TB9 A; 4R1R A; 3S8A A; 1ZZD A; 1RLR A; 3O0Q A; 2XAP A; 1H17 A; #chains in the Genus database with same CATH homology 1XJG A; 1XJM A; 2CVX A; 1XJE A; 2EUD A; 2XAK A; 1H7B A; 2CVS A; 1XJN A; 2XAZ A; 1R9D A; 2R1R A; 2YAJ A; 1HK8 A; 6R1R A; 5FAY A; 5FAW A; 2X0X A; 3K8T A; 1L1L A; 5A0U A; 2CVT A; 5CNT A; 3S8B A; 4ERM A; 1PEO A; 1CM5 A; 5R1R A; 1ZYZ A; 3PFL A; 3HNE A; 2XO4 A; 5CNU A; 2Y8N A; 1H7A A; 2XAW A; 2XAY A; 1XJK A; 1XJF A; 2CVU A; 1R1R A; 5CNS A; 3RSR A; 5FAU A; 7R1R A; 4MTJ A; 3R1R A; 3S87 A; 2CVV A; 3HNF A; 1PEU A; 2XO5 A; 1H79 A; 2XAV A; 3HNC A; 1R8W A; 1MZO A; 5A0Z A; 2ZLG A; 2WGH A; 2BQ1 E; 1QHM A; 5CNV A; 1H18 A; 3O0N A; 1XJJ A; 1PEM A; 2HA9 A; 2XAX A; 3TBA A; 2PFL A; 2F3O A; 1H78 A; 1PEQ A; 2CVW A; 2ZLF A; 3S8C A; 5KDP A; 5FAV A; 1H16 A; 2CVY A; 3HND A; 3O0O A; 4X3V A; 3TB9 A; 4R1R A; 3S8A A; 1ZZD A; 1RLR A; 3O0Q A; 2XAP A; 1H17 A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
