5FCY | Genus

Total Genus 53

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	53
sequence length	148
structure length	134
Chain Sequence	DPTIRKYVQSWQKLDVDEQLALFWFIYKEMSPAIAEGLFNQVKELNHEQQLQLQRDLIRRVDNQLSREYGSLGDTTKLLFWYLLSQGMDNATIVPFPADYKLSSESQELLEGIKGLGFEQQITLFRDYVSPMGA

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 134 atoms

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1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

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134 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Cartenoid binding protein
source organism	Nostoc sp. (strain pcc 7120 / utex 2576)
publication title	Structure, Diversity, and Evolution of a New Family of Soluble Carotenoid-Binding Proteins in Cyanobacteria. pubmed doi rcsb
molecule keywords	Red carotenoid protein (RCP)
total genus	53
structure length	134
sequence length	148
ec nomenclature
pdb deposition date	2015-12-15

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF09150	Carot_N	Orange carotenoid protein, N-terminal

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.10.2090.10	Mainly Alpha	Orthogonal Bundle	orange carotenoid protein, domain 2	Orange carotenoid-binding protein, N-terminal domain	5fcyA00

4XB4A 3MG3A 5FCXA 5FCYA 3MG1A 4XB5A 5HGRA 3MG2A
chains in the Genus database with same CATH superfamily

4XB4A 3MG3A 5FCXA 5FCYA 3MG1A 4XB5A 5HGRA 3MG2A
chains in the Genus database with same CATH topology

4XB4A 3MG3A 5FCXA 5FCYA 3MG1A 4XB5A 5HGRA 3MG2A
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 4XB4 A;  3MG3 A;  5FCX A;  5FCY A;  3MG1 A;  4XB5 A;  5HGR A;  3MG2 A; 
#chains in the Genus database with same CATH topology
 4XB4 A;  3MG3 A;  5FCX A;  5FCY A;  3MG1 A;  4XB5 A;  5HGR A;  3MG2 A; 
#chains in the Genus database with same CATH homology
 4XB4 A;  3MG3 A;  5FCX A;  5FCY A;  3MG1 A;  4XB5 A;  5HGR A;  3MG2 A;

...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)

...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

5FCYA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations