5HKE | Genus

Total Genus 93

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	93
sequence length	321
structure length	316
Chain Sequence	TAITLNGNSNYFGRNLDLDFSYGEEVIITPAEYEFKFRKEKAIKNHKSLIGVGIVANDYPLYFDAINEDGLGMAGLNFPGNAYYSDALENDKDNITPFEFIPWILGQCSDVNEARNLVEKINLINLSFSEQLPLAGLHWLIADREKSIVVEVTKSGVHIYDNPIGILTNNPEFNYQMYNLNKYRNLSISTPQNTFSDSVDLKVDGTGFGGIGLPGDVSPESRFVRATFSKLNSSKGMTVEEDITQFFHILGTVEQIKGVNKTESGKEEYTVYSNCYDLDNKTLYYTTYENRQIVAVTLGNRLVTYPFERKQIINKL

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

publication title	Crystal structure of bile salt hydrolase from Lactobacillus salivarius. pubmed doi rcsb
molecule keywords	Bile salt hydrolase
molecule tags	Hydrolase
source organism	Lactobacillus salivarius
total genus	93
structure length	316
sequence length	321
chains with identical sequence	B
ec nomenclature	ec 3.5.1.24: Choloylglycine hydrolase.
pdb deposition date	2016-01-14

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF02275	CBAH	Linear amide C-N hydrolases, choloylglycine hydrolase family

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.60.60.10	Alpha Beta	4-Layer Sandwich	Penicillin V Acylase; Chain A	Penicillin V Acylase; Chain A	5hkeA01

2Z71A 2BJFA 3GVZA 4WL3A 3MJIA 2PVAA 2IWMA 2QUYA 5HKEA 3HBCA 2OQCA 4WL2A 2RLCA 2RG2A 2HF0A 2X1EA 2RF8A 2X1CA 3PVAA 2BJGA 2X1DA 2HEZA
chains in the Genus database with same CATH superfamily

2Z71A 2BJFA 3GVZA 4WL3A 3FGTB 3MJIA 2PVAA 2IWMA 2QUYA 5HKEA 3FGWA 3HBCA 2OQCA 4WL2A 2RLCA 2RG2A 2HF0A 4BWCB 2X1EA 2RF8A 2X1CA 3PVAA 2BJGA 2X1DA 3FBXA 3FGRB 2HEZA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 2Z71 A;  2BJF A;  3GVZ A;  4WL3 A;  3MJI A;  2PVA A;  2IWM A;  2QUY A;  5HKE A;  3HBC A;  2OQC A;  4WL2 A;  2RLC A;  2RG2 A;  2HF0 A;  2X1E A;  2RF8 A;  2X1C A;  3PVA A;  2BJG A;  2X1D A;  2HEZ A; 
#chains in the Genus database with same CATH topology
 2Z71 A;  2BJF A;  3GVZ A;  4WL3 A;  3FGT B;  3MJI A;  2PVA A;  2IWM A;  2QUY A;  5HKE A;  3FGW A;  3HBC A;  2OQC A;  4WL2 A;  2RLC A;  2RG2 A;  2HF0 A;  4BWC B;  2X1E A;  2RF8 A;  2X1C A;  3PVA A;  2BJG A;  2X1D A;  3FBX A;  3FGR B;  2HEZ A; 
#chains in the Genus database with same CATH homology
 2Z71 A;  2BJF A;  3GVZ A;  4WL3 A;  3FGT B;  3MJI A;  2PVA A;  2IWM A;  2QUY A;  5HKE A;  3FGW A;  3HBC A;  2OQC A;  4WL2 A;  2RLC A;  2RG2 A;  2HF0 A;  4BWC B;  2X1E A;  2RF8 A;  2X1C A;  3PVA A;  2BJG A;  2X1D A;  3FBX A;  3FGR B;  2HEZ A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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5HKEA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations