5KAYA

Structure of spelter bound to zn2+
Total Genus 74
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
74
sequence length
201
structure length
201
Chain Sequence
SQYALARTFATQKVSLEESVLSQVTTAIQTAQEKIVYAGNGTLSDDDRASLATDLQGIRDQLMNLANSTDGNGRYIFAGYKTEAAPFDQATGGYHGGEKSVTQQVDSAITLEIGHTGAQIFNSICECAVPEPDGSDSEKNLFVMLDTAIAALKTPVEGNNVEKEKAAAAIDKTNRGLKNSLHNVLEVRWELEWFLELLSAK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Probing the minimal determinants of zinc binding with computational protein design.
pubmed doi rcsb
molecule tags De novo protein
source organism Unidentified
molecule keywords Spelter
total genus 74
structure length 201
sequence length 201
chains with identical sequence B
ec nomenclature
pdb deposition date 2016-06-02
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1330.10 Mainly Alpha Up-down Bundle f41 fragment of flagellin, N-terminal domain f41 fragment of flagellin, N-terminal domain 5kayA00
2ZBIA 3A5XA 3K8VA 3PWXA 1UCUA 3V47C 3K8WA 2D4XA 5KAYA 4CFIA 4NX9A 1IO1A
chains in the Genus database with same CATH superfamily
2ZBIA 3A5XA 3K8VA 3PWXA 1UCUA 3V47C 3K8WA 2D4XA 5KAYA 4CFIA 4NX9A 1IO1A
chains in the Genus database with same CATH topology
2ZBIA 3A5XA 3K8VA 3PWXA 1UCUA 3V47C 3K8WA 2D4XA 5KAYA 4CFIA 4NX9A 1IO1A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2ZBI A;  3A5X A;  3K8V A;  3PWX A;  1UCU A;  3V47 C;  3K8W A;  2D4X A;  5KAY A;  4CFI A;  4NX9 A;  1IO1 A; 
#chains in the Genus database with same CATH topology
 2ZBI A;  3A5X A;  3K8V A;  3PWX A;  1UCU A;  3V47 C;  3K8W A;  2D4X A;  5KAY A;  4CFI A;  4NX9 A;  1IO1 A; 
#chains in the Genus database with same CATH homology
 2ZBI A;  3A5X A;  3K8V A;  3PWX A;  1UCU A;  3V47 C;  3K8W A;  2D4X A;  5KAY A;  4CFI A;  4NX9 A;  1IO1 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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