The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
6
|
sequence length |
52
|
structure length |
52
|
Chain Sequence |
TLVKCACEPCLCNVDPSKAIDRNGLYYCSEACADGHTGGSKGCGHTGCNCHG
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule tags |
Metal binding protein
|
| molecule keywords |
METALLOTHIONEIN
|
| publication title |
A metallothionein containing a zinc finger within a four-metal cluster protects a bacterium from zinc toxicity.
pubmed doi rcsb |
| source organism |
Synechococcus elongatus
|
| total genus |
6
|
| structure length |
52
|
| sequence length |
52
|
| ec nomenclature | |
| pdb deposition date | 2001-07-04 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF02069 | Metallothio_Pro | Prokaryotic metallothionein |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Beta | Roll | Ribosomal Protein L24e; Chain: T; | Ribosomal Protein L24e; Chain: T; |
#chains in the Genus database with same CATH superfamily 1JJD A; #chains in the Genus database with same CATH topology 3CC7 U; 3G4S U; 3CCQ U; 3CCU U; 5AN9 G; 3CC2 U; 2JZ6 A; 1YIT U; 1KC8 V; 1Q86 V; 2OTL U; 1Q7Y V; 1YJ9 U; 1M1K V; 3ABS A; 3CCS U; 1YIJ U; 3CCV U; 1YI2 U; 1VQ5 U; 1VQK U; 1VQ8 U; 1S72 U; 3I55 U; 2QA4 U; 1NJI V; 1VQO U; 3CCM U; 3ABO A; 3AO0 A; 3CCJ U; 2QEZ A; 1KQS T; 3CME U; 1VQ6 U; 1YJW U; 3ANY A; 1VQM U; 3ABQ A; 4UY8 X; 1VQL U; 3CMA U; 1VQ7 U; 1KD1 V; 1QVF T; 5MLC Y; 1YHQ U; 1Q82 V; 3CCR U; 3J7Z X; 3CPW T; 3G6E U; 1VQ4 U; 3CCL U; 3CXC T; 3OW2 T; 5DM6 U; 1QVG T; 1VQP U; 1K73 V; 2OTJ U; 3CC4 U; 1W2B T; 1JJ2 T; 3G71 U; 1VQN U; 5H1S Y; 3CD6 U; 2QEX U; 1K8A V; 1N8R V; 3CCE U; 1JJD A; 1Q81 V; 1YJN U; 1K9M V; 1VQ9 U; 3I56 U; 3ABR A; 1M90 V; #chains in the Genus database with same CATH homology 1W2B T; 1JJ2 T; 3CCS U; 1YIJ U; 3CC7 U; 3CCV U; 1YI2 U; 1VQ7 U; 1KD1 V; 1VQ5 U; 1VQK U; 3G71 U; 1QVF T; 3CCQ U; 3G4S U; 1YHQ U; 1Q82 V; 1VQN U; 1VQ8 U; 3CD6 U; 3CCR U; 2QEX U; 3CCU U; 1K8A V; 1YJ9 U; 1N8R V; 1S72 U; 5AN9 G; 3I55 U; 3CCE U; 2QA4 U; 1NJI V; 1M1K V; 1JJD A; 1VQO U; 1Q81 V; 3CCM U; 3CPW T; 1YJN U; 3G6E U; 1VQ4 U; 3CC2 U; 3CCJ U; 3CCL U; 3CXC T; 3OW2 T; 1VQ9 U; 1YIT U; 1K9M V; 1KQS T; 2OTJ U; 3CME U; 1KC8 V; 1VQ6 U; 1QVG T; 3I56 U; 1YJW U; 1Q86 V; 2OTL U; 1M90 V; 1VQM U; 1VQP U; 1K73 V; 1Q7Y V; 1VQL U; 3CMA U; 3CC4 U;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
