3KZFA

Structure of giardia carbamate kinase
Total Genus 81
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
81
sequence length
315
structure length
285
Chain Sequence
SAGKTVVIALGGNAMLKEKGDYDTQRKNVEIAASEIYKIHKAGYKVVLTSGNGPQVGAIKLQNQAAAGVSPEMPLHVCGAMSQGFIGYMMSQAMDNVFCANNEPANCVTCVTQTLVDPKDQAFTNPTKPVGGWRVVVPSPRPLEIVEYGVIKTLIDNNVLVICTNGGGIPCKRENKVISGVDAVIDKDLATSLLAKTLNSDYLMILTDVLNACINYKKPDERKLEEIKLSEILALEKDGHFASMGPKVRAAIEFTQATGKMSIITSLSTAVDALNGKCGTRIIKD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
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molecule tags Transferase
molecule keywords Carbamate kinase
publication title X-ray structure and characterization of carbamate kinase from the human parasite Giardia lamblia.
pubmed doi rcsb
source organism Giardia lamblia atcc 50803
total genus 81
structure length 285
sequence length 315
chains with identical sequence B, C, D
ec nomenclature ec 2.7.2.2: Carbamate kinase.
pdb deposition date 2009-12-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00696 AA_kinase Amino acid kinase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1160.10 Alpha Beta 3-Layer(aba) Sandwich Carbamate kinase Acetylglutamate kinase-like 3kzfA00
3L76A 4JZ7A 3C20A 1OH9A 1Z9DA 3LL9A 2WE5A 2J5VA 2JJ4A 4A7WA 2OGXB 3D2PA 3D40A 2W21A 3QVFA 4NDRA 3B8GA 2V5HA 1E19A 3ZZGA 2J0XA 4NDPB 3WWMA 2BNFA 3WWNA 4JZ9A 2AP9A 2J5TA 3QUNA 3AB2A 2OGXA 2V4YA 1GSJA 2BRIA 2JJXA 3D2MA 2X2WA 1YBDA 2IJ9A 2WE4A 3ZZIA 2J4LA 2BUFA 4F6TB 2JI5A 3S6GA 2BNEA 4NDOB 2A1FA 4A7XA 4I49A 1B7BA 3QVHA 3C1MA 1OHBA 4Q1TA 3K4OA 1OHAA 4USJA 3S6HA 3TVIA 3LKKA 3K56A 2R98A 2BNDA 2BTYA 4JZ8A 3T7BA 4OLCA 4NDPA 3ZZFA 4NDRB 3ZZHA 1GS5A 4NDQB 2WXBA 3K4YA 4KZTA 3U6UA 3D41A 2BMUA 3EK6A 3QUOA 2VA1A 2J0WA 3L86A 3AB4A 2AKOA 2R8VA 3S6KA 4AXSA 3AAWA 3K52A 3NWYA 2J4KA 3KZFA 2E9YA 2HMFA 3LL5A 4F6TA 4NDQA 3C1NA 2J4JA 2CDQA 2RD5A 4NDOA 2BRXA 4AB7A 3QURA 3EK5A
chains in the Genus database with same CATH superfamily
3L76A 4JZ7A 3C20A 1OH9A 1Z9DA 3LL9A 2WE5A 2J5VA 2JJ4A 4A7WA 2OGXB 3D2PA 3D40A 2W21A 3QVFA 4NDRA 3B8GA 2V5HA 1E19A 3ZZGA 2J0XA 4NDPB 3WWMA 2BNFA 3WWNA 4JZ9A 2AP9A 2J5TA 3QUNA 3AB2A 2OGXA 2V4YA 1GSJA 2BRIA 2JJXA 3D2MA 2X2WA 1YBDA 2IJ9A 2WE4A 3ZZIA 2J4LA 2BUFA 4F6TB 2JI5A 3S6GA 2BNEA 4NDOB 2A1FA 4A7XA 4I49A 1B7BA 3QVHA 3C1MA 1OHBA 4Q1TA 3K4OA 1OHAA 4USJA 3S6HA 3TVIA 3LKKA 3K56A 2R98A 2BNDA 2BTYA 4JZ8A 3T7BA 4OLCA 4NDPA 3ZZFA 4NDRB 3ZZHA 1GS5A 4NDQB 2WXBA 3K4YA 4KZTA 3U6UA 3D41A 2BMUA 3EK6A 3QUOA 2VA1A 2J0WA 3L86A 3AB4A 2AKOA 2R8VA 3S6KA 4AXSA 3AAWA 3K52A 3NWYA 2J4KA 3KZFA 2E9YA 2HMFA 3LL5A 4F6TA 4NDQA 3C1NA 2J4JA 2CDQA 2RD5A 4NDOA 2BRXA 4AB7A 3QURA 3EK5A
chains in the Genus database with same CATH topology
3L76A 4JZ7A 3C20A 1OH9A 1Z9DA 3LL9A 2WE5A 2J5VA 2JJ4A 4A7WA 2OGXB 3D2PA 3D40A 2W21A 3QVFA 4NDRA 3B8GA 2V5HA 1E19A 3ZZGA 2J0XA 4NDPB 3WWMA 2BNFA 3WWNA 4JZ9A 2AP9A 2J5TA 3QUNA 3AB2A 2OGXA 2V4YA 1GSJA 2BRIA 2JJXA 3D2MA 2X2WA 1YBDA 2IJ9A 2WE4A 3ZZIA 2J4LA 2BUFA 4F6TB 2JI5A 3S6GA 2BNEA 4NDOB 2A1FA 4A7XA 4I49A 1B7BA 3QVHA 3C1MA 1OHBA 4Q1TA 3K4OA 1OHAA 4USJA 3S6HA 3TVIA 3LKKA 3K56A 2R98A 2BNDA 2BTYA 4JZ8A 3T7BA 4OLCA 4NDPA 3ZZFA 4NDRB 3ZZHA 1GS5A 4NDQB 2WXBA 3K4YA 4KZTA 3U6UA 3D41A 2BMUA 3EK6A 3QUOA 2VA1A 2J0WA 3L86A 3AB4A 2AKOA 2R8VA 3S6KA 4AXSA 3AAWA 3K52A 3NWYA 2J4KA 3KZFA 2E9YA 2HMFA 3LL5A 4F6TA 4NDQA 3C1NA 2J4JA 2CDQA 2RD5A 4NDOA 2BRXA 4AB7A 3QURA 3EK5A
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 3L76 A;  4JZ7 A;  3C20 A;  1OH9 A;  1Z9D A;  3LL9 A;  2WE5 A;  2J5V A;  2JJ4 A;  4A7W A;  2OGX B;  3D2P A;  3D40 A;  2W21 A;  3QVF A;  4NDR A;  3B8G A;  2V5H A;  1E19 A;  3ZZG A;  2J0X A;  4NDP B;  3WWM A;  2BNF A;  3WWN A;  4JZ9 A;  2AP9 A;  2J5T A;  3QUN A;  3AB2 A;  2OGX A;  2V4Y A;  1GSJ A;  2BRI A;  2JJX A;  3D2M A;  2X2W A;  1YBD A;  2IJ9 A;  2WE4 A;  3ZZI A;  2J4L A;  2BUF A;  4F6T B;  2JI5 A;  3S6G A;  2BNE A;  4NDO B;  2A1F A;  4A7X A;  4I49 A;  1B7B A;  3QVH A;  3C1M A;  1OHB A;  4Q1T A;  3K4O A;  1OHA A;  4USJ A;  3S6H A;  3TVI A;  3LKK A;  3K56 A;  2R98 A;  2BND A;  2BTY A;  4JZ8 A;  3T7B A;  4OLC A;  4NDP A;  3ZZF A;  4NDR B;  3ZZH A;  1GS5 A;  4NDQ B;  2WXB A;  3K4Y A;  4KZT A;  3U6U A;  3D41 A;  2BMU A;  3EK6 A;  3QUO A;  2VA1 A;  2J0W A;  3L86 A;  3AB4 A;  2AKO A;  2R8V A;  3S6K A;  4AXS A;  3AAW A;  3K52 A;  3NWY A;  2J4K A;  3KZF A;  2E9Y A;  2HMF A;  3LL5 A;  4F6T A;  4NDQ A;  3C1N A;  2J4J A;  2CDQ A;  2RD5 A;  4NDO A;  2BRX A;  4AB7 A;  3QUR A;  3EK5 A; 
#chains in the Genus database with same CATH topology
 3L76 A;  4JZ7 A;  3C20 A;  1OH9 A;  1Z9D A;  3LL9 A;  2WE5 A;  2J5V A;  2JJ4 A;  4A7W A;  2OGX B;  3D2P A;  3D40 A;  2W21 A;  3QVF A;  4NDR A;  3B8G A;  2V5H A;  1E19 A;  3ZZG A;  2J0X A;  4NDP B;  3WWM A;  2BNF A;  3WWN A;  4JZ9 A;  2AP9 A;  2J5T A;  3QUN A;  3AB2 A;  2OGX A;  2V4Y A;  1GSJ A;  2BRI A;  2JJX A;  3D2M A;  2X2W A;  1YBD A;  2IJ9 A;  2WE4 A;  3ZZI A;  2J4L A;  2BUF A;  4F6T B;  2JI5 A;  3S6G A;  2BNE A;  4NDO B;  2A1F A;  4A7X A;  4I49 A;  1B7B A;  3QVH A;  3C1M A;  1OHB A;  4Q1T A;  3K4O A;  1OHA A;  4USJ A;  3S6H A;  3TVI A;  3LKK A;  3K56 A;  2R98 A;  2BND A;  2BTY A;  4JZ8 A;  3T7B A;  4OLC A;  4NDP A;  3ZZF A;  4NDR B;  3ZZH A;  1GS5 A;  4NDQ B;  2WXB A;  3K4Y A;  4KZT A;  3U6U A;  3D41 A;  2BMU A;  3EK6 A;  3QUO A;  2VA1 A;  2J0W A;  3L86 A;  3AB4 A;  2AKO A;  2R8V A;  3S6K A;  4AXS A;  3AAW A;  3K52 A;  3NWY A;  2J4K A;  3KZF A;  2E9Y A;  2HMF A;  3LL5 A;  4F6T A;  4NDQ A;  3C1N A;  2J4J A;  2CDQ A;  2RD5 A;  4NDO A;  2BRX A;  4AB7 A;  3QUR A;  3EK5 A; 
#chains in the Genus database with same CATH homology
 3L76 A;  4JZ7 A;  3C20 A;  1OH9 A;  1Z9D A;  3LL9 A;  2WE5 A;  2J5V A;  2JJ4 A;  4A7W A;  2OGX B;  3D2P A;  3D40 A;  2W21 A;  3QVF A;  4NDR A;  3B8G A;  2V5H A;  1E19 A;  3ZZG A;  2J0X A;  4NDP B;  3WWM A;  2BNF A;  3WWN A;  4JZ9 A;  2AP9 A;  2J5T A;  3QUN A;  3AB2 A;  2OGX A;  2V4Y A;  1GSJ A;  2BRI A;  2JJX A;  3D2M A;  2X2W A;  1YBD A;  2IJ9 A;  2WE4 A;  3ZZI A;  2J4L A;  2BUF A;  4F6T B;  2JI5 A;  3S6G A;  2BNE A;  4NDO B;  2A1F A;  4A7X A;  4I49 A;  1B7B A;  3QVH A;  3C1M A;  1OHB A;  4Q1T A;  3K4O A;  1OHA A;  4USJ A;  3S6H A;  3TVI A;  3LKK A;  3K56 A;  2R98 A;  2BND A;  2BTY A;  4JZ8 A;  3T7B A;  4OLC A;  4NDP A;  3ZZF A;  4NDR B;  3ZZH A;  1GS5 A;  4NDQ B;  2WXB A;  3K4Y A;  4KZT A;  3U6U A;  3D41 A;  2BMU A;  3EK6 A;  3QUO A;  2VA1 A;  2J0W A;  3L86 A;  3AB4 A;  2AKO A;  2R8V A;  3S6K A;  4AXS A;  3AAW A;  3K52 A;  3NWY A;  2J4K A;  3KZF A;  2E9Y A;  2HMF A;  3LL5 A;  4F6T A;  4NDQ A;  3C1N A;  2J4J A;  2CDQ A;  2RD5 A;  4NDO A;  2BRX A;  4AB7 A;  3QUR A;  3EK5 A;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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