4AXSA

Structure of carbamate kinase from mycoplasma penetrans
Total Genus 78
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
78
sequence length
307
structure length
291
Chain Sequence
RIVIALGGNALGDNPSQQKELVKIPAAKIAALIQEGHEVIVGHGNGPQVGMIFNAFADAKKANEKTALVPFAEAGGMSQGYIGYHMLTAISNELKKLNIQKDVLYFLTQTIVDANDPAFKNPTKPVGPFYSNPNSVIVKVVASPIPVDFIGIDAIKQNVNNGCVCIVGGGGGIPTIIQDNQYIGVDGVIDKDFALAKIADAVNADIFVVLTAVDYVYVDFNKPTQKALKTVDVKALNNFINQDQFAKGSMLPKIKAAMGFVNGHPNRSAIIADLSKVEDALKGLSGTKIIA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
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molecule tags Oxidoreductase
molecule keywords CARBAMATE KINASE
publication title Structural Characterization of the Enzymes Composing the Arginine Deiminase Pathway in Mycoplasma Penetrans.
pubmed doi rcsb
source organism Mycoplasma penetrans
total genus 78
structure length 291
sequence length 307
ec nomenclature
pdb deposition date 2012-06-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00696 AA_kinase Amino acid kinase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1160.10 Alpha Beta 3-Layer(aba) Sandwich Carbamate kinase Acetylglutamate kinase-like 4axsA00
3LL9A 3L76A 3AAWA 4Q1TA 3WWNA 3L86A 2W21A 3NWYA 3AB4A 1Z9DA 3C1NA 3ZZGA 3ZZHA 3TVIA 3C1MA 1B7BA 4NDOA 2J5TA 3D40A 4NDRB 3QURA 3T7BA 4JZ7A 2E9YA 2BRXA 1GSJA 3LL5A 2J4JA 4I49A 1GS5A 2BNEA 1OHBA 1YBDA 2CDQA 1OH9A 4NDOB 4NDRA 2V4YA 2BNDA 4NDPB 2JI5A 2J0WA 4JZ8A 3LKKA 3QVHA 2BNFA 3S6GA 3S6HA 4NDPA 4A7WA 2R98A 2WE5A 2V5HA 3D41A 3K4OA 3AB2A 3B8GA 2J4KA 1OHAA 2JJ4A 3U6UA 2BUFA 2J5VA 4KZTA 2BRIA 3KZFA 4USJA 3WWMA 3EK5A 3QVFA 2JJXA 2OGXA 4NDQB 4JZ9A 3D2PA 2X2WA 4AB7A 3C20A 3K4YA 2RD5A 2VA1A 3QUNA 2WXBA 4A7XA 4F6TB 2AKOA 4NDQA 2BTYA 2OGXB 2J0XA 1E19A 3QUOA 4AXSA 2AP9A 2BMUA 3ZZIA 3ZZFA 2IJ9A 4F6TA 2A1FA 3K56A 2WE4A 4OLCA 3D2MA 3EK6A 3S6KA 2J4LA 2HMFA 2R8VA 3K52A
chains in the Genus database with same CATH superfamily
3LL9A 3L76A 3AAWA 4Q1TA 3WWNA 3L86A 2W21A 3NWYA 3AB4A 1Z9DA 3C1NA 3ZZGA 3ZZHA 3TVIA 3C1MA 1B7BA 4NDOA 2J5TA 3D40A 4NDRB 3QURA 3T7BA 4JZ7A 2E9YA 2BRXA 1GSJA 3LL5A 2J4JA 4I49A 1GS5A 2BNEA 1OHBA 1YBDA 2CDQA 1OH9A 4NDOB 4NDRA 2V4YA 2BNDA 4NDPB 2JI5A 2J0WA 4JZ8A 3LKKA 3QVHA 2BNFA 3S6GA 3S6HA 4NDPA 4A7WA 2R98A 2WE5A 2V5HA 3D41A 3K4OA 3AB2A 3B8GA 2J4KA 1OHAA 2JJ4A 3U6UA 2BUFA 2J5VA 4KZTA 2BRIA 3KZFA 4USJA 3WWMA 3EK5A 3QVFA 2JJXA 2OGXA 4NDQB 4JZ9A 3D2PA 2X2WA 4AB7A 3C20A 3K4YA 2RD5A 2VA1A 3QUNA 2WXBA 4A7XA 4F6TB 2AKOA 4NDQA 2BTYA 2OGXB 2J0XA 1E19A 3QUOA 4AXSA 2AP9A 2BMUA 3ZZIA 3ZZFA 2IJ9A 4F6TA 2A1FA 3K56A 2WE4A 4OLCA 3D2MA 3EK6A 3S6KA 2J4LA 2HMFA 2R8VA 3K52A
chains in the Genus database with same CATH topology
3LL9A 3L76A 3AAWA 4Q1TA 3WWNA 3L86A 2W21A 3NWYA 3AB4A 1Z9DA 3C1NA 3ZZGA 3ZZHA 3TVIA 3C1MA 1B7BA 4NDOA 2J5TA 3D40A 4NDRB 3QURA 3T7BA 4JZ7A 2E9YA 2BRXA 1GSJA 3LL5A 2J4JA 4I49A 1GS5A 2BNEA 1OHBA 1YBDA 2CDQA 1OH9A 4NDOB 4NDRA 2V4YA 2BNDA 4NDPB 2JI5A 2J0WA 4JZ8A 3LKKA 3QVHA 2BNFA 3S6GA 3S6HA 4NDPA 4A7WA 2R98A 2WE5A 2V5HA 3D41A 3K4OA 3AB2A 3B8GA 2J4KA 1OHAA 2JJ4A 3U6UA 2BUFA 2J5VA 4KZTA 2BRIA 3KZFA 4USJA 3WWMA 3EK5A 3QVFA 2JJXA 2OGXA 4NDQB 4JZ9A 3D2PA 2X2WA 4AB7A 3C20A 3K4YA 2RD5A 2VA1A 3QUNA 2WXBA 4A7XA 4F6TB 2AKOA 4NDQA 2BTYA 2OGXB 2J0XA 1E19A 3QUOA 4AXSA 2AP9A 2BMUA 3ZZIA 3ZZFA 2IJ9A 4F6TA 2A1FA 3K56A 2WE4A 4OLCA 3D2MA 3EK6A 3S6KA 2J4LA 2HMFA 2R8VA 3K52A
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 3LL9 A;  3L76 A;  3AAW A;  4Q1T A;  3WWN A;  3L86 A;  2W21 A;  3NWY A;  3AB4 A;  1Z9D A;  3C1N A;  3ZZG A;  3ZZH A;  3TVI A;  3C1M A;  1B7B A;  4NDO A;  2J5T A;  3D40 A;  4NDR B;  3QUR A;  3T7B A;  4JZ7 A;  2E9Y A;  2BRX A;  1GSJ A;  3LL5 A;  2J4J A;  4I49 A;  1GS5 A;  2BNE A;  1OHB A;  1YBD A;  2CDQ A;  1OH9 A;  4NDO B;  4NDR A;  2V4Y A;  2BND A;  4NDP B;  2JI5 A;  2J0W A;  4JZ8 A;  3LKK A;  3QVH A;  2BNF A;  3S6G A;  3S6H A;  4NDP A;  4A7W A;  2R98 A;  2WE5 A;  2V5H A;  3D41 A;  3K4O A;  3AB2 A;  3B8G A;  2J4K A;  1OHA A;  2JJ4 A;  3U6U A;  2BUF A;  2J5V A;  4KZT A;  2BRI A;  3KZF A;  4USJ A;  3WWM A;  3EK5 A;  3QVF A;  2JJX A;  2OGX A;  4NDQ B;  4JZ9 A;  3D2P A;  2X2W A;  4AB7 A;  3C20 A;  3K4Y A;  2RD5 A;  2VA1 A;  3QUN A;  2WXB A;  4A7X A;  4F6T B;  2AKO A;  4NDQ A;  2BTY A;  2OGX B;  2J0X A;  1E19 A;  3QUO A;  4AXS A;  2AP9 A;  2BMU A;  3ZZI A;  3ZZF A;  2IJ9 A;  4F6T A;  2A1F A;  3K56 A;  2WE4 A;  4OLC A;  3D2M A;  3EK6 A;  3S6K A;  2J4L A;  2HMF A;  2R8V A;  3K52 A; 
#chains in the Genus database with same CATH topology
 3LL9 A;  3L76 A;  3AAW A;  4Q1T A;  3WWN A;  3L86 A;  2W21 A;  3NWY A;  3AB4 A;  1Z9D A;  3C1N A;  3ZZG A;  3ZZH A;  3TVI A;  3C1M A;  1B7B A;  4NDO A;  2J5T A;  3D40 A;  4NDR B;  3QUR A;  3T7B A;  4JZ7 A;  2E9Y A;  2BRX A;  1GSJ A;  3LL5 A;  2J4J A;  4I49 A;  1GS5 A;  2BNE A;  1OHB A;  1YBD A;  2CDQ A;  1OH9 A;  4NDO B;  4NDR A;  2V4Y A;  2BND A;  4NDP B;  2JI5 A;  2J0W A;  4JZ8 A;  3LKK A;  3QVH A;  2BNF A;  3S6G A;  3S6H A;  4NDP A;  4A7W A;  2R98 A;  2WE5 A;  2V5H A;  3D41 A;  3K4O A;  3AB2 A;  3B8G A;  2J4K A;  1OHA A;  2JJ4 A;  3U6U A;  2BUF A;  2J5V A;  4KZT A;  2BRI A;  3KZF A;  4USJ A;  3WWM A;  3EK5 A;  3QVF A;  2JJX A;  2OGX A;  4NDQ B;  4JZ9 A;  3D2P A;  2X2W A;  4AB7 A;  3C20 A;  3K4Y A;  2RD5 A;  2VA1 A;  3QUN A;  2WXB A;  4A7X A;  4F6T B;  2AKO A;  4NDQ A;  2BTY A;  2OGX B;  2J0X A;  1E19 A;  3QUO A;  4AXS A;  2AP9 A;  2BMU A;  3ZZI A;  3ZZF A;  2IJ9 A;  4F6T A;  2A1F A;  3K56 A;  2WE4 A;  4OLC A;  3D2M A;  3EK6 A;  3S6K A;  2J4L A;  2HMF A;  2R8V A;  3K52 A; 
#chains in the Genus database with same CATH homology
 3LL9 A;  3L76 A;  3AAW A;  4Q1T A;  3WWN A;  3L86 A;  2W21 A;  3NWY A;  3AB4 A;  1Z9D A;  3C1N A;  3ZZG A;  3ZZH A;  3TVI A;  3C1M A;  1B7B A;  4NDO A;  2J5T A;  3D40 A;  4NDR B;  3QUR A;  3T7B A;  4JZ7 A;  2E9Y A;  2BRX A;  1GSJ A;  3LL5 A;  2J4J A;  4I49 A;  1GS5 A;  2BNE A;  1OHB A;  1YBD A;  2CDQ A;  1OH9 A;  4NDO B;  4NDR A;  2V4Y A;  2BND A;  4NDP B;  2JI5 A;  2J0W A;  4JZ8 A;  3LKK A;  3QVH A;  2BNF A;  3S6G A;  3S6H A;  4NDP A;  4A7W A;  2R98 A;  2WE5 A;  2V5H A;  3D41 A;  3K4O A;  3AB2 A;  3B8G A;  2J4K A;  1OHA A;  2JJ4 A;  3U6U A;  2BUF A;  2J5V A;  4KZT A;  2BRI A;  3KZF A;  4USJ A;  3WWM A;  3EK5 A;  3QVF A;  2JJX A;  2OGX A;  4NDQ B;  4JZ9 A;  3D2P A;  2X2W A;  4AB7 A;  3C20 A;  3K4Y A;  2RD5 A;  2VA1 A;  3QUN A;  2WXB A;  4A7X A;  4F6T B;  2AKO A;  4NDQ A;  2BTY A;  2OGX B;  2J0X A;  1E19 A;  3QUO A;  4AXS A;  2AP9 A;  2BMU A;  3ZZI A;  3ZZF A;  2IJ9 A;  4F6T A;  2A1F A;  3K56 A;  2WE4 A;  4OLC A;  3D2M A;  3EK6 A;  3S6K A;  2J4L A;  2HMF A;  2R8V A;  3K52 A;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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