The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
40
|
sequence length |
152
|
structure length |
152
|
Chain Sequence |
ETAFVEVVLFESSPSGDYTTHTTGLTGRFSRAGAMLSAEGEIVQMHPLGLCNNNDEEDLYEYGWVGVVKLEQPELDPKPCLTVLGKAKRAVQRGATAVIFDVSENPEAIDQLNQGSEDPLKRPVVYVKGADAIKLMNIVNKQKVARARIQHL
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule tags |
Ligase
|
| molecule keywords |
E3 UBIQUITIN-PROTEIN LIGASE ZNRF3
|
| publication title |
Structures of Wnt-Antagonist Znrf3 and its Complex with R-Spondin 1 and Implications for Signaling.
pubmed doi rcsb |
| source organism |
Mus musculus
|
| total genus |
40
|
| structure length |
152
|
| sequence length |
152
|
| chains with identical sequence |
B, C, D
|
| ec nomenclature |
ec
2.3.2.27: RING-type E3 ubiquitin transferase. |
| pdb deposition date | 2013-11-01 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF18212 | ZNRF_3_ecto | ZNRF-3 Ectodomain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 3-Layer(bba) Sandwich | Glucose Oxidase; domain 1 | Glucose Oxidase; domain 1 |
#chains in the Genus database with same CATH superfamily 4C86 A; 1CX8 A; 3SJX A; 1V6C A; 2EK9 A; 4C8P A; 2XEF A; 3BHX A; 3FED A; 4NGR A; 3KAS A; 4MCR A; 3BXM A; 4C8T A; 3D7H A; 2JBJ A; 2C6P A; 1Z8L A; 4P4B A; 4C99 A; 4CDK A; 4C9R A; 4MCP A; 4OC4 A; 4OC3 A; 3IWW A; 2JBK A; 4NGP A; 4C9A A; 3EIF A; 4P45 A; 1DE4 C; 3RBU A; 4X3R A; 4TWE A; 4C8F A; 2CIJ A; 4NGN A; 5D29 A; 3SJG A; 1Y9Z A; 4OC1 A; 3FEE A; 4OC5 A; 1XF1 A; 2XEG A; 3FF3 A; 4P4J A; 4YN3 A; 2C6G A; 3SJE A; 3I74 A; 4P44 A; 4JZ0 A; 2PVW A; 3VTA A; 4P4F A; 1WVM A; 3D7D A; 5F09 A; 2OOT A; 4C8C A; 4OC0 A; 3FEC A; 3ICU A; 4NGQ A; 3BI0 A; 4KNG E; 4C9U A; 2OR4 A; 2XEJ A; 3S9M A; 4MCQ A; 4CDJ A; 4C8U A; 3D7F A; 2PVV A; 4P4D A; 4C85 A; 4C9V A; 4P4E A; 4NGM A; 4C84 A; 5ELY A; 4JYW A; 4C9E A; 3I6S A; 4NGT A; 5IB9 A; 3S9N A; 3S9L A; 4C8A A; 2C6C A; 3D7G A; 4MCS A; 4W9Y A; 3BI1 A; 4OME A; 4TJV A; 4LQG A; 4OC2 A; 4NGS A; 3SJF A; 4TJX A; 2EK8 A; 4P4I A; 3IIB A; 2XEI A; #chains in the Genus database with same CATH topology 4C86 A; 3TLG A; 1CX8 A; 3SJX A; 1V6C A; 2EK9 A; 4C8P A; 4J0N A; 4COB A; 4IIX A; 2XEF A; 1EZA A; 3BHX A; 4EYS A; 3FED A; 4NGR A; 3KAS A; 4MCR A; 3BXM A; 2MP0 A; 3D7H A; 4C8T A; 1VBH A; 2JBJ A; 1CS0 B; 1R61 A; 1Z8L A; 2C6P A; 3TLE A; 4P4B A; 3G23 A; 4IIY A; 2GP4 A; 3T0T A; 4C99 A; 1J3L A; 3T07 A; 2C5Q A; 4CDK A; 5IR2 A; 4C9R A; 3T05 A; 4MCP A; 4OC4 A; 4OC3 A; 4E94 A; 3IWW A; 2JBK A; 4NGP A; 2X0S A; 4JVO A; 4C9A A; 1DIK A; 2EZB A; 2HWG A; 4MI1 A; 2AUN A; 3EIF A; 3TLB A; 4P45 A; 1DE4 C; 3TLC A; 3RBU A; 4X3R A; 2E28 A; 4TWE A; 4M8D A; 4C8F A; 5JVL A; 2CIJ A; 3KRV A; 4NGN A; 5D29 A; 2B0A A; 3TYX A; 3SJG A; 1Y9Z A; 1C30 B; 4OC1 A; 5F1Y A; 3FEE A; 1T36 B; 4OC5 A; 1XF1 A; 3K4I A; 2XEG A; 3FF3 A; 4P4J A; 5K99 A; 4YN3 A; 3EZE A; 2C6G A; 4E5S A; 3SJE A; 1CE8 B; 5FD8 A; 2DIK A; 1NXJ A; 4COG A; 3I74 A; 2OLS A; 4P44 A; 5F9M A; 4CZ1 A; 4JZ0 A; 2PVW A; 2YJV A; 2YJT A; 1VI4 A; 1NBW A; 3VTA A; 1Q5X A; 1WVM A; 4P4F A; 5F5X A; 3D7D A; 5F09 A; 3EZA A; 2HRO A; 2OOT A; 2R82 A; 4C8C A; 4OC0 A; 1ZL0 A; 4H1H A; 3FEC A; 3ICU A; 4NGQ A; 3BI0 A; 4KNG E; 1VBG A; 3T5M A; 4C9U A; 1EZB A; 2OR4 A; 2XEJ A; 3TLY A; 3S9M A; 4CO9 A; 4MCQ A; 2HI6 A; 5JYB A; 4CDJ A; 1KC7 A; 4C8U A; 3D7F A; 2D0O A; 2PVV A; 1JDE A; 4P4D A; 2EZA A; 4C85 A; 4C9V A; 3SR3 A; 1KBL A; 4P4E A; 3TLZ A; 3NOJ A; 1ZRS A; 1JDB C; 4NGM A; 1BXR B; 5ELY A; 4C84 A; 4INJ A; 4JYW A; 4C9E A; 3U1B A; 1M6V B; 3I6S A; 3TLG B; 4NGT A; 5IB9 A; 3S9N A; 3S9L A; 2FM4 A; 4C8A A; 1ZYM A; 3C8O A; 2C6C A; 3D7G A; 3EZB A; 1GGO A; 4MCS A; 4W9Y A; 3BI1 A; 4OME A; 2EZC A; 4TJV A; 1C3O B; 2AUM A; 3GJZ A; 3K9T A; 4LQG A; 4OC2 A; 4NGS A; 3TLA A; 4MJX A; 1A9X B; 3SJF A; 4TJX A; 1KEE B; 2EK8 A; 2PCN A; 4P4I A; 3IIB A; 2XEI A; 2D0P A; #chains in the Genus database with same CATH homology 4C86 A; 1CX8 A; 3SJX A; 1V6C A; 2EK9 A; 4C8P A; 2XEF A; 3BHX A; 3FED A; 4NGR A; 3KAS A; 4MCR A; 3BXM A; 4C8T A; 3D7H A; 2JBJ A; 2C6P A; 1Z8L A; 4P4B A; 2GP4 A; 4C99 A; 2C5Q A; 4CDK A; 5IR2 A; 4C9R A; 4MCP A; 4OC4 A; 4OC3 A; 3IWW A; 2JBK A; 4NGP A; 4C9A A; 3EIF A; 4P45 A; 1DE4 C; 3RBU A; 4X3R A; 4TWE A; 4C8F A; 2CIJ A; 4NGN A; 5D29 A; 3SJG A; 1Y9Z A; 4OC1 A; 3FEE A; 4OC5 A; 1XF1 A; 2XEG A; 3FF3 A; 4P4J A; 4YN3 A; 2C6G A; 3SJE A; 3I74 A; 4P44 A; 4JZ0 A; 2PVW A; 3VTA A; 4P4F A; 1WVM A; 3D7D A; 5F09 A; 2OOT A; 4C8C A; 4OC0 A; 3FEC A; 3ICU A; 4NGQ A; 3BI0 A; 4KNG E; 4C9U A; 2OR4 A; 2XEJ A; 3S9M A; 4MCQ A; 4CDJ A; 4C8U A; 3D7F A; 2PVV A; 4P4D A; 4C85 A; 4C9V A; 4P4E A; 4NGM A; 4C84 A; 5ELY A; 4JYW A; 4C9E A; 3I6S A; 4NGT A; 5IB9 A; 3S9N A; 3S9L A; 4C8A A; 2C6C A; 3D7G A; 4MCS A; 4W9Y A; 3BI1 A; 4OME A; 4TJV A; 3K9T A; 4LQG A; 4OC2 A; 4NGS A; 3SJF A; 4TJX A; 2EK8 A; 4P4I A; 3IIB A; 2XEI A;
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