The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
47
|
sequence length |
126
|
structure length |
126
|
Chain Sequence |
GMTYTTAKAAEKIGISAYTLRFYDKEGLLPNVGRDEYGNRRFTDKDLQWLSLLQCLKNTGMSLKDIKRFAECTIIGDDTIEERLSLFENQTKNVKCQIAELKRYLDLLEYKLAFYQKAKALGSVKA
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule tags |
Transcription
|
| molecule keywords |
MerR family regulator protein
|
| publication title |
Structural basis of thiol-based regulation of formaldehyde detoxification in H. influenzae by a MerR regulator with no sensor region.
pubmed doi rcsb |
| source organism |
Haemophilus influenzae (strain atcc 51907 / dsm 11121 / kw20 / rd)
|
| total genus |
47
|
| structure length |
126
|
| sequence length |
126
|
| chains with identical sequence |
B, C, D
|
| ec nomenclature | |
| pdb deposition date | 2015-08-18 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF00376 | MerR | MerR family regulatory protein |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Orthogonal Bundle | Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 | Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 |
#chains in the Genus database with same CATH superfamily 3Q1M A; 2ZHH A; 5D8C A; 5I41 B; 1R8D A; 4R24 B; 3Q5P A; 2ZHG A; 1Q06 A; 5I44 A; 3D70 A; 4R22 B; 2VZ4 A; 1Q07 A; 1R8E A; 4WLW A; 3UCS A; 3HH0 A; 4WLS A; 4J2N A; 1Q0A A; 3Q5S A; 3GP4 A; 3D71 A; 3GPV A; 3Q3D A; 3QAO A; 1JBG A; 5D90 A; 3D6Z A; 3Q5R A; 2JML A; 1Q08 A; 3IAO A; 2DG6 A; 3D6Y A; 5E01 A; 4R4E A; 1EXJ A; 1EXI A; 1Q09 A; 3Q2Y A; 1Q05 A; #chains in the Genus database with same CATH topology 3Q1M A; 2ZHH A; 3EZ7 A; 5D8C A; 5I41 B; 1R8D A; 4R24 B; 2OG0 A; 3Q5P A; 3EZF A; 1Q06 A; 2ZHG A; 4LHF A; 5I44 A; 3D70 A; 4R22 B; 2VZ4 A; 2IEF A; 1Q07 A; 1R8E A; 1RH6 A; 4WLW A; 3UCS A; 4DCZ A; 2KVV A; 3HH0 A; 4WLS A; 4J2N A; 1Q0A A; 3Q5S A; 1LX8 A; 3GP4 A; 3D71 A; 3GPV A; 1Y6U A; 3Q3D A; 1JBG A; 3QAO A; 5D90 A; 3D6Z A; 3Q5R A; 2JML A; 1Q08 A; 3IAO A; 3Q2Y A; 2DG6 A; 3D6Y A; 5E01 A; 3EZ6 A; 3EZ2 A; 4R4E A; 1EXJ A; 1EXI A; 1PM6 A; 1Q09 A; 3EZ9 A; 1Q05 A; #chains in the Genus database with same CATH homology 3Q1M A; 2ZHH A; 3EZ7 A; 5D8C A; 5I41 B; 1R8D A; 4R24 B; 2OG0 A; 3Q5P A; 3EZF A; 1Q06 A; 2ZHG A; 4LHF A; 5I44 A; 3D70 A; 4R22 B; 2VZ4 A; 2IEF A; 1Q07 A; 1R8E A; 1RH6 A; 4WLW A; 3UCS A; 4DCZ A; 2KVV A; 3HH0 A; 4WLS A; 4J2N A; 1Q0A A; 3Q5S A; 1LX8 A; 3GP4 A; 3D71 A; 3GPV A; 1Y6U A; 3Q3D A; 1JBG A; 3QAO A; 5D90 A; 3D6Z A; 3Q5R A; 2JML A; 1Q08 A; 3IAO A; 3Q2Y A; 2DG6 A; 3D6Y A; 5E01 A; 3EZ6 A; 3EZ2 A; 4R4E A; 1EXJ A; 1EXI A; 1PM6 A; 1Q09 A; 3EZ9 A; 1Q05 A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
