The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
78
|
sequence length |
221
|
structure length |
204
|
Chain Sequence |
GAMEKFKTLLYDIPIEMEVSEEIISYAKLQLGKKLNDSIYVSLTDHINFAIQRNQKGLDIKNALLWETKRLYKDEFAIGKEALVMVKNKTGVSLPEDEAGFIALHIVNAELNEEMPNIINITKVMQEILSIVKYHFKIEFNSLHYYRFVTHLKFFAQRLFNGTHMYHRAYECTKKIQTYIEREYEHKLTSDELLYLTIHIERVV
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule tags |
Transcription
|
| molecule keywords |
Transcription antiterminator licT
|
| publication title |
Activation of the LicT Transcriptional Antiterminator Involves a Domain Swing/Lock Mechanism Provoking Massive Structural Changes
pubmed doi rcsb |
| source organism |
Bacillus subtilis
|
| total genus |
78
|
| structure length |
204
|
| sequence length |
221
|
| ec nomenclature | |
| pdb deposition date | 2004-06-10 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF00874 | PRD | PRD domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Orthogonal Bundle | PTS-regulatory domain, PRD | PRD domain | ||
| Mainly Alpha | Orthogonal Bundle | PTS-regulatory domain, PRD | PRD domain |
#chains in the Genus database with same CATH superfamily 1TLV A; 3RIO A; 1H99 A; 3NUF A; #chains in the Genus database with same CATH topology 3RIO A; 3SQN A; 1TLV A; 1H99 A; 3NUF A; #chains in the Genus database with same CATH homology 1TLV A; 3RIO A; 1H99 A; 3NUF A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
