The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
42
|
sequence length |
174
|
structure length |
171
|
Chain Sequence |
KVQELSVYEINDLDRHSPKILKNARFGLGDLVPFTNKLYTGDLKKRVGITAGLCVVIEHVPEKNGDRFEATYSFYFGDYGHLSVQGPYLTYEDSFLAITGGAGIFEGAYGQVKLQQLVYPTKLFYTFYLKGLANDLPLELIGTPVPPSKDVEPAPEAKALKPSGVVSNFTN
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule tags |
Isomerase
|
| molecule keywords |
allene oxide cyclase
|
| publication title |
X-ray structure of allene oxide cyclase from arabidopsis thaliana AT3G25760
rcsb |
| source organism |
Arabidopsis thaliana
|
| total genus |
42
|
| structure length |
171
|
| sequence length |
174
|
| ec nomenclature |
ec
5.3.99.6: Allene-oxide cyclase. |
| pdb deposition date | 2005-06-01 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF06351 | Allene_ox_cyc | Allene oxide cyclase |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Beta | Beta Barrel | AOC barrel-like | Allene oxide cyclase-like |
#chains in the Genus database with same CATH superfamily 4H6A A; 2BRJ A; 2GIN A; 4H69 A; 4H6C A; 4CQ7 A; 4H6B A; 2DIO A; 1ZVC A; 4CQ6 A; 2Q4I A; 1Z8K A; #chains in the Genus database with same CATH topology 4H6A A; 2BRJ A; 2OOJ A; 2GIN A; 4H69 A; 4H6C A; 4AUD A; 4CQ7 A; 4H6B A; 2Q03 A; 2DIO A; 1ZVC A; 3V0R A; 4CQ6 A; 2Q4I A; 1Z8K A; #chains in the Genus database with same CATH homology 4H6A A; 2BRJ A; 2GIN A; 4H69 A; 4H6C A; 4CQ7 A; 4H6B A; 2DIO A; 1ZVC A; 4CQ6 A; 2Q4I A; 1Z8K A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
