The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
46
|
sequence length |
180
|
structure length |
180
|
Chain Sequence |
HVQELFVYEINERDRGSPVFLPFGGKKQPGTDAHVNSLGDLVPFSNKIYDGSLKTRLGITAGLCTLISHSDQKNGDRYEALYSFYFGDYGHISVQGPYITYEDSYLAITGGSGIFAGCYGQAKLHQIIFPFKLFYTFYLQGIKKLPEALCAPCVPPSPSVAPADEAKQCLPNHVAPNFTK
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule tags |
Isomerase
|
| molecule keywords |
Allene oxide cyclase
|
| publication title |
Crystal Structures of Physcomitrella patens AOC1 and AOC2: Insights into the Enzyme Mechanism and Differences in Substrate Specificity.
pubmed doi rcsb |
| source organism |
Physcomitrella patens
|
| total genus |
46
|
| structure length |
180
|
| sequence length |
180
|
| chains with identical sequence |
B, C, D, E, F, G, H, I, J, K, L
|
| ec nomenclature |
ec
5.3.99.6: Allene-oxide cyclase. |
| pdb deposition date | 2012-09-19 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF06351 | Allene_ox_cyc | Allene oxide cyclase |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Beta | Beta Barrel | AOC barrel-like | Allene oxide cyclase-like |
#chains in the Genus database with same CATH superfamily 1ZVC A; 4CQ7 A; 2BRJ A; 4CQ6 A; 2DIO A; 2Q4I A; 4H69 A; 1Z8K A; 4H6C A; 4H6A A; 2GIN A; 4H6B A; #chains in the Genus database with same CATH topology 4AUD A; 1ZVC A; 4CQ7 A; 2BRJ A; 3V0R A; 4CQ6 A; 2OOJ A; 2DIO A; 2Q4I A; 4H69 A; 1Z8K A; 4H6C A; 2Q03 A; 4H6A A; 2GIN A; 4H6B A; #chains in the Genus database with same CATH homology 1ZVC A; 4CQ7 A; 2BRJ A; 4CQ6 A; 2DIO A; 2Q4I A; 4H69 A; 1Z8K A; 4H6C A; 4H6A A; 2GIN A; 4H6B A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
