The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
60
|
sequence length |
205
|
structure length |
192
|
Chain Sequence |
DYDIFQGHMANLKSTAKLVKPIQYDEVIEVERIFADPAFIEQHRQRILASFKDAKESALYHELTHIVIKDNLFSCAMNAIVGYFEFNIDEAELKNVMEGLKRDEDNTVQAIAEKIIKKALVFNHLQKEWKVEITDEVVKNVISLYYEKTNQSVREYLDDKQKFEGVRTALLEERMVLETINHFKFHFNLTGQ
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Structure of the hypothetical Mycoplasma protein MPN555 suggests a chaperone function.
pubmed doi rcsb |
| molecule tags |
Structural genomics, unknown function
|
| source organism |
Mycoplasma pneumoniae
|
| molecule keywords |
Hypothetical protein MG377 homolog
|
| total genus |
60
|
| structure length |
192
|
| sequence length |
205
|
| chains with identical sequence |
B, C, D
|
| ec nomenclature | |
| pdb deposition date | 2005-06-08 |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Orthogonal Bundle | Trigger factor, domain 2 | Trigger factor, C-terminal domain |
#chains in the Genus database with same CATH superfamily 1W26 A; 2NSA A; 2MLX A; 1T11 A; 2MLZ A; 3GTY X; 3GU0 A; 2MLY A; 1ZXJ A; #chains in the Genus database with same CATH topology 1W26 A; 2NSA A; 2MLX A; 1T11 A; 2MLZ A; 3GTY X; 3GU0 A; 2MLY A; 1ZXJ A; #chains in the Genus database with same CATH homology 1W26 A; 2NSA A; 2MLX A; 1T11 A; 2MLZ A; 3GTY X; 3GU0 A; 2MLY A; 1ZXJ A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
